Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28i23
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   4.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   6.0  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   7.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 201 PGGPAGTPP 175
           PGGP G PP
Sbjct: 48  PGGPPGAPP 56



 Score = 21.0 bits (42), Expect = 7.9
 Identities = 11/53 (20%), Positives = 24/53 (45%)
 Frame = +3

Query: 111 LERMKLKHNITTDPVNEEKQREVEYQPDLLAVSTQYTKIAYDVFKQAVVRLQE 269
           L++ + +H+  +   +   Q    Y   L     Q+ ++     +QA+ +LQE
Sbjct: 99  LQQQQQQHHQDSSSEHASNQERFGYFSSLKDHQHQFAELGRKKLEQAIQQLQE 151


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 399 VGAVATHLGAXIWMTLVSGI 458
           VGA ATH  + IW  +  G+
Sbjct: 338 VGASATHGASGIWGIIAIGL 357


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 243 KQAVVRLQESKAYVIATRTSQPF 311
           KQ + RL +   YV+  RT  PF
Sbjct: 226 KQFMPRLYDLLGYVMPDRTFAPF 248


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
          protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 30 DVLNRMCNMCT 62
          +VLN  CN CT
Sbjct: 59 EVLNNHCNRCT 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,346
Number of Sequences: 438
Number of extensions: 2413
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)