Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28i21
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.71 
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    27   1.6  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    27   1.6  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          27   2.2  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   6.6  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   6.6  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    25   8.8  

>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 131 KSSVKGSASHAPGSSLDITTEFRGNKEDANKIDCVLMAEHHNASVL 268
           +S+    +S  P  SLD   E+ GN  D + +   L   H++ S L
Sbjct: 304 QSTGSSVSSSLPTLSLDFKQEYSGNNHDMSGLSSSLSKSHNSTSAL 349



 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +2

Query: 44  RSTTVLIKYI*N*SLKSASRLAAPTKAT*KSSVKGSASHAPGSSLDITTEFRGNKEDA 217
           RSTT L+    + S  S   LA PT+++   +  G+AS   G   ++++  R + + A
Sbjct: 156 RSTTSLLSSSAHHSRSSYYDLATPTRSSFSYNTVGAASLPSGGLSNLSSSLRSSSKSA 213


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +3

Query: 231 VFLWLSIIMQAFCNTTHETVKKKRNELFEKELEMMLGRDIVLNENETKVNEIFMKLKTKE 410
           V L+  + +QAF N  H   KKK      K +E+  G  I L+  + K N   ++     
Sbjct: 591 VQLFYEMKLQAFVNANHNAPKKKNLNDSLKSVELE-GNGIKLSSEKGKNNVNKVRNDNAR 649

Query: 411 LDQGF 425
            D GF
Sbjct: 650 FDCGF 654


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 495 LYKLIKKMPKGAVLHAHDTSLLGPDYVLXLT 587
           +YK+  K P   V HAHD S++   Y L ++
Sbjct: 371 VYKVDGKAPVSTVSHAHDNSIVALRYNLRIS 401


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = -1

Query: 283 SWVVLQNACIMMLSHKNTVNFVGIFFITSKFCGYIKRRSRSMGGGTLDGRFLCCF 119
           SWV L N   +   +  +V  VG      KF    K   + +  G     +LCCF
Sbjct: 69  SWV-LSNMDAVACIYSTSVAAVGASMYNEKFTTQSKEMIKGIPKGNPSAGYLCCF 122


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 521 WHFFNQLVQFSFLDIIF 471
           WH F   VQ+ FL I++
Sbjct: 687 WHMFTSFVQYIFLSIMY 703


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -1

Query: 523 FGIFLISLYSSVFLTSSLYSKKCLDKTKGRLCRNPWSSSFVLSFINISLTLVSFSFN 353
           F  F+ S  + + L+  L SK         L    +S SFV++ + + L  +SF FN
Sbjct: 445 FSTFMTSEDAELVLSYDLMSKSLFISVVSTL---NFSLSFVVAILLVPLQFISFRFN 498


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 258 QAFCNTTHETVKKKRNELFEKELEMMLGRDIVLNENETKVNEIFMKLKTK 407
           QA+ + +   ++KK+ ++ +K+ E+M  R IVL E    V  +    K K
Sbjct: 453 QAWTSESERELEKKKEQVEKKQEELMQTR-IVLEEQVFLVENMIEDAKAK 501


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,012
Number of Sequences: 5004
Number of extensions: 52253
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)