Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28i21
(619 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR456417-1|CAG30303.1| 511|Homo sapiens CECR1 protein. 71 3e-12
BC051755-1|AAH51755.1| 511|Homo sapiens cat eye syndrome chromo... 71 3e-12
AF190746-1|AAF65941.1| 511|Homo sapiens CECR1 protein protein. 71 3e-12
AK074702-1|BAC11148.1| 270|Homo sapiens protein ( Homo sapiens ... 39 0.016
AK027682-1|BAB55293.1| 270|Homo sapiens protein ( Homo sapiens ... 39 0.016
AB209648-1|BAD92885.1| 303|Homo sapiens cat eye syndrome critic... 39 0.016
BC033630-1|AAH33630.1| 344|Homo sapiens sorting nexin 16 protein. 31 2.5
AF305779-1|AAG25676.1| 343|Homo sapiens sorting nexin 16 protein. 31 2.5
X56932-1|CAA40254.1| 203|Homo sapiens 23 kD highly basic protei... 31 4.3
BC071929-1|AAH71929.1| 203|Homo sapiens ribosomal protein L13a ... 31 4.3
BC070223-1|AAH70223.1| 203|Homo sapiens ribosomal protein L13a ... 31 4.3
BC065236-1|AAH65236.1| 203|Homo sapiens ribosomal protein L13a ... 31 4.3
BC062537-1|AAH62537.1| 203|Homo sapiens ribosomal protein L13a ... 31 4.3
BC004900-1|AAH04900.2| 201|Homo sapiens RPL13A protein protein. 31 4.3
BC001836-1|AAH01836.1| 203|Homo sapiens ribosomal protein L13a ... 31 4.3
BC001675-1|AAH01675.1| 203|Homo sapiens ribosomal protein L13a ... 31 4.3
BC000514-1|AAH00514.1| 203|Homo sapiens ribosomal protein L13a ... 31 4.3
AL356120-1|CAH73036.1| 203|Homo sapiens protein ( Human DNA seq... 31 4.3
AK222747-1|BAD96467.1| 203|Homo sapiens ribosomal protein L13a ... 31 4.3
AB082924-1|BAC16800.1| 142|Homo sapiens ribosomal protein L13a ... 31 4.3
AB028893-1|BAA88214.1| 203|Homo sapiens ribosomal protein L13a ... 31 4.3
AK023960-1|BAB14741.1| 744|Homo sapiens protein ( Homo sapiens ... 30 5.7
BC105605-1|AAI05606.1| 142|Homo sapiens RPL13A protein protein. 29 9.9
>CR456417-1|CAG30303.1| 511|Homo sapiens CECR1 protein.
Length = 511
Score = 70.9 bits (166), Expect = 3e-12
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Frame = +3
Query: 234 FLWLSIIMQAFCNTTHETVKKKRNELFEKELEMMLGRDIVLNENETKVNEIFMKLKTKEL 413
FL L++ M F + ++ + R L KE M LG +VLN E NE M LK E+
Sbjct: 14 FLLLAVAMSFFGSAL--SIDETRAHLLLKEKMMRLGGRLVLNTKEELANERLMTLKIAEM 71
Query: 414 DQGFRHRRPFVLSKHFFEYKDDVKKTELYKLIKKMPKGAVLHAHDTSLLGPDY-VLXLTY 590
+ R F S HFF+ K +++++++ +++ MPKGA LH HD ++ D+ V +TY
Sbjct: 72 KEAMR-TLIFPPSMHFFQAKHLIERSQVFNILRMMPKGAALHLHDIGIVTMDWLVRNVTY 130
Score = 38.7 bits (86), Expect = 0.016
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = -2
Query: 219 LASSLLPRNSVVISSDDPGAWEAEPLTDDFYVAFVGAASRLADLR 85
+A+ + + +VISSDDP + A+ L+ DFY F+G ADLR
Sbjct: 426 VATLMATGHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLR 470
>BC051755-1|AAH51755.1| 511|Homo sapiens cat eye syndrome
chromosome region, candidate 1 protein.
Length = 511
Score = 70.9 bits (166), Expect = 3e-12
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Frame = +3
Query: 234 FLWLSIIMQAFCNTTHETVKKKRNELFEKELEMMLGRDIVLNENETKVNEIFMKLKTKEL 413
FL L++ M F + ++ + R L KE M LG +VLN E NE M LK E+
Sbjct: 14 FLLLAVAMSFFGSAL--SIDETRAHLLLKEKMMRLGGRLVLNTKEELANERLMTLKIAEM 71
Query: 414 DQGFRHRRPFVLSKHFFEYKDDVKKTELYKLIKKMPKGAVLHAHDTSLLGPDY-VLXLTY 590
+ R F S HFF+ K +++++++ +++ MPKGA LH HD ++ D+ V +TY
Sbjct: 72 KEAMR-TLIFPPSMHFFQAKHLIERSQVFNILRMMPKGAALHLHDIGIVTMDWLVRNVTY 130
Score = 38.7 bits (86), Expect = 0.016
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = -2
Query: 219 LASSLLPRNSVVISSDDPGAWEAEPLTDDFYVAFVGAASRLADLR 85
+A+ + + +VISSDDP + A+ L+ DFY F+G ADLR
Sbjct: 426 VATLMATGHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLR 470
>AF190746-1|AAF65941.1| 511|Homo sapiens CECR1 protein protein.
Length = 511
Score = 70.9 bits (166), Expect = 3e-12
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Frame = +3
Query: 234 FLWLSIIMQAFCNTTHETVKKKRNELFEKELEMMLGRDIVLNENETKVNEIFMKLKTKEL 413
FL L++ M F + ++ + R L KE M LG +VLN E NE M LK E+
Sbjct: 14 FLLLAVAMSFFGSAL--SIDETRAHLLLKEKMMRLGGRLVLNTKEELANERLMTLKIAEM 71
Query: 414 DQGFRHRRPFVLSKHFFEYKDDVKKTELYKLIKKMPKGAVLHAHDTSLLGPDY-VLXLTY 590
+ R F S HFF+ K +++++++ +++ MPKGA LH HD ++ D+ V +TY
Sbjct: 72 KEAMR-TLIFPPSMHFFQAKHLIERSQVFNILRMMPKGAALHLHDIGIVTMDWLVRNVTY 130
Score = 38.7 bits (86), Expect = 0.016
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = -2
Query: 219 LASSLLPRNSVVISSDDPGAWEAEPLTDDFYVAFVGAASRLADLR 85
+A+ + + +VISSDDP + A+ L+ DFY F+G ADLR
Sbjct: 426 VATLMATGHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLR 470
>AK074702-1|BAC11148.1| 270|Homo sapiens protein ( Homo sapiens
cDNA FLJ90221 fis, clone NT2RM1000462, highly similar to
Cat eye syndrome critical region protein 1precursor. ).
Length = 270
Score = 38.7 bits (86), Expect = 0.016
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = -2
Query: 219 LASSLLPRNSVVISSDDPGAWEAEPLTDDFYVAFVGAASRLADLR 85
+A+ + + +VISSDDP + A+ L+ DFY F+G ADLR
Sbjct: 185 VATLMATGHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLR 229
>AK027682-1|BAB55293.1| 270|Homo sapiens protein ( Homo sapiens
cDNA FLJ14776 fis, clone NT2RP4000212, weakly similar to
ATRIAL GLAND-SPECIFIC ANTIGEN PRECURSOR. ).
Length = 270
Score = 38.7 bits (86), Expect = 0.016
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = -2
Query: 219 LASSLLPRNSVVISSDDPGAWEAEPLTDDFYVAFVGAASRLADLR 85
+A+ + + +VISSDDP + A+ L+ DFY F+G ADLR
Sbjct: 185 VATLMATGHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLR 229
>AB209648-1|BAD92885.1| 303|Homo sapiens cat eye syndrome critical
region protein 1 isoform a precursor variant protein.
Length = 303
Score = 38.7 bits (86), Expect = 0.016
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = -2
Query: 219 LASSLLPRNSVVISSDDPGAWEAEPLTDDFYVAFVGAASRLADLR 85
+A+ + + +VISSDDP + A+ L+ DFY F+G ADLR
Sbjct: 218 VATLMATGHPMVISSDDPAMFGAKGLSYDFYEVFMGIGGMKADLR 262
>BC033630-1|AAH33630.1| 344|Homo sapiens sorting nexin 16 protein.
Length = 344
Score = 31.5 bits (68), Expect = 2.5
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +3
Query: 258 QAFCNTTHETVKKKRNELFEKELEMMLGRDIVLNENETKVNEIFMKLKTKELD 416
+AFC T ET + + EL EK+ EM + + L+E + ++ + +++T L+
Sbjct: 227 RAFCETLEETNYRLQKELLEKQKEMESLKKL-LSEKQLHIDTLENRIRTLSLE 278
>AF305779-1|AAG25676.1| 343|Homo sapiens sorting nexin 16 protein.
Length = 343
Score = 31.5 bits (68), Expect = 2.5
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +3
Query: 258 QAFCNTTHETVKKKRNELFEKELEMMLGRDIVLNENETKVNEIFMKLKTKELD 416
+AFC T ET + + EL EK+ EM + + L+E + ++ + +++T L+
Sbjct: 227 RAFCETLEETNYRLQKELLEKQKEMESLKKL-LSEKQLHIDTLENRIRTLSLE 278
>X56932-1|CAA40254.1| 203|Homo sapiens 23 kD highly basic protein
protein.
Length = 203
Score = 30.7 bits (66), Expect = 4.3
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Frame = +3
Query: 147 VPPPMLLDRRLI*PQNFEVIKKMPTKLTVFLW-----LSIIMQAFCNTTHETVKKKRNEL 311
+PPP +R++ P +V++ PT+ +L + QA T E K+K
Sbjct: 108 IPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIH 167
Query: 312 FEKELEMMLGRDIVLNENETKVNEIFMKLKTKEL 413
+ K+ ++M R E K+++ LKT L
Sbjct: 168 YRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGL 201
>BC071929-1|AAH71929.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 30.7 bits (66), Expect = 4.3
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Frame = +3
Query: 147 VPPPMLLDRRLI*PQNFEVIKKMPTKLTVFLW-----LSIIMQAFCNTTHETVKKKRNEL 311
+PPP +R++ P +V++ PT+ +L + QA T E K+K
Sbjct: 108 IPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIH 167
Query: 312 FEKELEMMLGRDIVLNENETKVNEIFMKLKTKEL 413
+ K+ ++M R E K+++ LKT L
Sbjct: 168 YRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGL 201
>BC070223-1|AAH70223.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 30.7 bits (66), Expect = 4.3
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Frame = +3
Query: 147 VPPPMLLDRRLI*PQNFEVIKKMPTKLTVFLW-----LSIIMQAFCNTTHETVKKKRNEL 311
+PPP +R++ P +V++ PT+ +L + QA T E K+K
Sbjct: 108 IPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIH 167
Query: 312 FEKELEMMLGRDIVLNENETKVNEIFMKLKTKEL 413
+ K+ ++M R E K+++ LKT L
Sbjct: 168 YRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGL 201
>BC065236-1|AAH65236.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 30.7 bits (66), Expect = 4.3
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Frame = +3
Query: 147 VPPPMLLDRRLI*PQNFEVIKKMPTKLTVFLW-----LSIIMQAFCNTTHETVKKKRNEL 311
+PPP +R++ P +V++ PT+ +L + QA T E K+K
Sbjct: 108 IPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIH 167
Query: 312 FEKELEMMLGRDIVLNENETKVNEIFMKLKTKEL 413
+ K+ ++M R E K+++ LKT L
Sbjct: 168 YRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGL 201
>BC062537-1|AAH62537.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 30.7 bits (66), Expect = 4.3
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Frame = +3
Query: 147 VPPPMLLDRRLI*PQNFEVIKKMPTKLTVFLW-----LSIIMQAFCNTTHETVKKKRNEL 311
+PPP +R++ P +V++ PT+ +L + QA T E K+K
Sbjct: 108 IPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIH 167
Query: 312 FEKELEMMLGRDIVLNENETKVNEIFMKLKTKEL 413
+ K+ ++M R E K+++ LKT L
Sbjct: 168 YRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGL 201
>BC004900-1|AAH04900.2| 201|Homo sapiens RPL13A protein protein.
Length = 201
Score = 30.7 bits (66), Expect = 4.3
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Frame = +3
Query: 147 VPPPMLLDRRLI*PQNFEVIKKMPTKLTVFLW-----LSIIMQAFCNTTHETVKKKRNEL 311
+PPP +R++ P +V++ PT+ +L + QA T E K+K
Sbjct: 106 IPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIH 165
Query: 312 FEKELEMMLGRDIVLNENETKVNEIFMKLKTKEL 413
+ K+ ++M R E K+++ LKT L
Sbjct: 166 YRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGL 199
>BC001836-1|AAH01836.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 30.7 bits (66), Expect = 4.3
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Frame = +3
Query: 147 VPPPMLLDRRLI*PQNFEVIKKMPTKLTVFLW-----LSIIMQAFCNTTHETVKKKRNEL 311
+PPP +R++ P +V++ PT+ +L + QA T E K+K
Sbjct: 108 IPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIH 167
Query: 312 FEKELEMMLGRDIVLNENETKVNEIFMKLKTKEL 413
+ K+ ++M R E K+++ LKT L
Sbjct: 168 YRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGL 201
>BC001675-1|AAH01675.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 30.7 bits (66), Expect = 4.3
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Frame = +3
Query: 147 VPPPMLLDRRLI*PQNFEVIKKMPTKLTVFLW-----LSIIMQAFCNTTHETVKKKRNEL 311
+PPP +R++ P +V++ PT+ +L + QA T E K+K
Sbjct: 108 IPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIH 167
Query: 312 FEKELEMMLGRDIVLNENETKVNEIFMKLKTKEL 413
+ K+ ++M R E K+++ LKT L
Sbjct: 168 YRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGL 201
>BC000514-1|AAH00514.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 30.7 bits (66), Expect = 4.3
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Frame = +3
Query: 147 VPPPMLLDRRLI*PQNFEVIKKMPTKLTVFLW-----LSIIMQAFCNTTHETVKKKRNEL 311
+PPP +R++ P +V++ PT+ +L + QA T E K+K
Sbjct: 108 IPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIH 167
Query: 312 FEKELEMMLGRDIVLNENETKVNEIFMKLKTKEL 413
+ K+ ++M R E K+++ LKT L
Sbjct: 168 YRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGL 201
>AL356120-1|CAH73036.1| 203|Homo sapiens protein ( Human DNA
sequence from clone RP11-365K22 on chromosome 13
Contains a novel gene similar to ribosomal protein L13a
(RPL13A). ).
Length = 203
Score = 30.7 bits (66), Expect = 4.3
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Frame = +3
Query: 147 VPPPMLLDRRLI*PQNFEVIKKMPTKLTVFLW-----LSIIMQAFCNTTHETVKKKRNEL 311
+PPP +R++ P +V++ PT+ +L + QA T E K+K
Sbjct: 108 IPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIH 167
Query: 312 FEKELEMMLGRDIVLNENETKVNEIFMKLKTKEL 413
+ K+ ++M R E K+++ LKT L
Sbjct: 168 YRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGL 201
>AK222747-1|BAD96467.1| 203|Homo sapiens ribosomal protein L13a
variant protein.
Length = 203
Score = 30.7 bits (66), Expect = 4.3
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Frame = +3
Query: 147 VPPPMLLDRRLI*PQNFEVIKKMPTKLTVFLW-----LSIIMQAFCNTTHETVKKKRNEL 311
+PPP +R++ P +V++ PT+ +L + QA T E K+K
Sbjct: 108 IPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIH 167
Query: 312 FEKELEMMLGRDIVLNENETKVNEIFMKLKTKEL 413
+ K+ ++M R E K+++ LKT L
Sbjct: 168 YRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGL 201
>AB082924-1|BAC16800.1| 142|Homo sapiens ribosomal protein L13a
protein.
Length = 142
Score = 30.7 bits (66), Expect = 4.3
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Frame = +3
Query: 147 VPPPMLLDRRLI*PQNFEVIKKMPTKLTVFLW-----LSIIMQAFCNTTHETVKKKRNEL 311
+PPP +R++ P +V++ PT+ +L + QA T E K+K
Sbjct: 47 IPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIH 106
Query: 312 FEKELEMMLGRDIVLNENETKVNEIFMKLKTKEL 413
+ K+ ++M R E K+++ LKT L
Sbjct: 107 YRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGL 140
>AB028893-1|BAA88214.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 30.7 bits (66), Expect = 4.3
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Frame = +3
Query: 147 VPPPMLLDRRLI*PQNFEVIKKMPTKLTVFLW-----LSIIMQAFCNTTHETVKKKRNEL 311
+PPP +R++ P +V++ PT+ +L + QA T E K+K
Sbjct: 108 IPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIH 167
Query: 312 FEKELEMMLGRDIVLNENETKVNEIFMKLKTKEL 413
+ K+ ++M R E K+++ LKT L
Sbjct: 168 YRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGL 201
>AK023960-1|BAB14741.1| 744|Homo sapiens protein ( Homo sapiens
cDNA FLJ13898 fis, clone THYRO1001738, weakly similar to
TUBULIN--TYROSINE LIGASE (EC 6.3.2.25). ).
Length = 744
Score = 30.3 bits (65), Expect = 5.7
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 78 IRVLSRRVGWPLQQKQHRNRPSRVPPPMLLD 170
IR L RR GW ++ HR+ P+ +PP LD
Sbjct: 30 IRCLLRRRGWVEKKMVHRSGPTLLPPQKDLD 60
>BC105605-1|AAI05606.1| 142|Homo sapiens RPL13A protein protein.
Length = 142
Score = 29.5 bits (63), Expect = 9.9
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Frame = +3
Query: 147 VPPPMLLDRRLI*PQNFEVIKKMPTKLTVFLW-----LSIIMQAFCNTTHETVKKKRNEL 311
+PPP +R++ P +V++ PT+ +L + QA T + K+K
Sbjct: 47 IPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEDKRKEKAKIH 106
Query: 312 FEKELEMMLGRDIVLNENETKVNEIFMKLKTKEL 413
+ K+ ++M R E K+++ LKT L
Sbjct: 107 YRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGL 140
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,821,415
Number of Sequences: 237096
Number of extensions: 1774315
Number of successful extensions: 4266
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4260
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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