Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28i19
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    30   0.19 
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    28   1.00 
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    27   1.3  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    27   1.7  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    27   1.7  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    27   1.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.7  
SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...    27   2.3  
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...    27   2.3  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   3.0  
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom...    26   3.0  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   3.0  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   3.0  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   5.3  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   7.0  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   9.3  

>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +3

Query: 243 DNLTKKVQDLVTKYEKFTGVEEIMAI-QNTVIDAQDKFIAAQDRRRDVGRQLANIESRLK 419
           ++LTK++++   K +K   +EEI A   N++ D Q K +  +D        +    + LK
Sbjct: 28  EHLTKRIRNFTKKKQKILKLEEIAASDSNSLNDDQRKALQGKD-------AVLTTLNELK 80

Query: 420 ELHAEMQNTMKGDEKY 467
           EL +++  T   DEK+
Sbjct: 81  ELLSQIDATRIRDEKH 96


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 27.9 bits (59), Expect = 1.00
 Identities = 16/58 (27%), Positives = 34/58 (58%)
 Frame = -3

Query: 364 WAAMNLSCASITVFCIAIISSTPVNFSYLVTKSCTFLVKLSYLNLSATSETFVAGTYL 191
           + A++ +C+++ V     ++    +F+ +V + CT L+ +  L  S+TSET   G+Y+
Sbjct: 177 YVALSFACSALIVLPTKFLARFS-SFN-VVFQICTILIFIISLAASSTSETRNTGSYI 232


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -3

Query: 355 MNLSCASITVFCIAIISSTPVNFSY--LVTKSCTFLVKLSYLNLSATSETFV 206
           M L  A+    CI ++  T +NF+Y  L    CT +V L   N  AT   F+
Sbjct: 144 MRLWNAAFGTLCIPLVYFTALNFNYSFLAATLCTLMVALD--NHLATISRFI 193


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = +3

Query: 198 VPATKVSEVAERFKYDNLTKKVQDLVTKYEKFTGVEEIMAIQNT 329
           +  +K++ + ++F+ +  TKK  +L  K+     ++ I A++NT
Sbjct: 570 IEMSKLNAIRQQFRKEYQTKKWDELSVKWTDEENMKYISAVENT 613


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +3

Query: 369 RRRDVGRQLANIESRLKELHAEMQNTMKGDEKYLQLCTEEHKLIIQER 512
           R+  + +QL+N + +L+         ++  ++ +    EE+K+I QER
Sbjct: 332 RKEQLLKQLSNAQEKLEHEQHSRNQKLEAAKQRMDNIREEYKVITQER 379


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +3

Query: 303  EEIMAIQNTVIDAQDKFIAAQDRRRDVGRQLANIESRLKELHAEMQNTMKGDEKYLQLCT 482
            EEI  ++  +I  Q+  +  Q  +    R ++++ES+ KEL  +++   + DE +L +  
Sbjct: 954  EEIERLKVDIIGLQNASLNMQSLKDSDNRTISDLESKNKELEKKLK---EADEYWLLIVE 1010

Query: 483  E-EHKLIIQERALR 521
            E E K    +  LR
Sbjct: 1011 ELESKRTKDKELLR 1024



 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +3

Query: 345 DKFIAAQDRRRDVGRQLANIESRLKELHAEMQNTMKGDEKYLQLCTEEHKLIIQE 509
           ++ +  Q +  D+  +L   +S  K++  EMQ   +G E  ++   EEH  + ++
Sbjct: 659 EELLDNQQKLYDLRIELDYTKSNCKQMEEEMQVLREGHESEIKDFIEEHSKLTKQ 713


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/68 (23%), Positives = 29/68 (42%)
 Frame = -3

Query: 349 LSCASITVFCIAIISSTPVNFSYLVTKSCTFLVKLSYLNLSATSETFVAGTYLVIS*STF 170
           ++  + T     + +STPV  + L T +CT    + Y +   TS  +   +   +   T 
Sbjct: 527 VTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPV---TS 583

Query: 169 SRFVTFNC 146
           +   T NC
Sbjct: 584 TPVTTTNC 591



 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -3

Query: 307 SSTPVNFSYLVTKSCTFLVKLSYLNLSATSETFVAGTYLVIS*STFSRFVTFNC 146
           +STPV  + L T +CT    + Y +   TS  +   +   +   T +   T NC
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPV---TSTPVTTTNC 532



 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 307 SSTPVNFSYLVTKSCTFLVKLSYLNLSATS 218
           +STPV  + L T +CT    + Y +   TS
Sbjct: 459 TSTPVTSTPLTTTNCTTSTSIPYTSTPVTS 488



 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 313 IISSTPVNFSYLVTKSCTFLVKLSYLNLSATS 218
           I SSTPV  + + T +CT    + Y +   TS
Sbjct: 516 ISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTS 547



 Score = 24.6 bits (51), Expect = 9.3
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -3

Query: 313 IISSTPVNFSYLVTKSCTFLVKLSYLNLSATSETFVAGTYLVIS 182
           I SSTPV  + + T +CT    + Y +   TS    + +   +S
Sbjct: 575 ISSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTSSSSTQVS 618


>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 303 EEIMAIQNTVIDAQDKFIAAQDRRRDVGRQLANI 404
           + I+ + NT +D + K + A  + + VGR+ ANI
Sbjct: 10  QHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANI 43


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 303 EEIMAIQNTVIDAQDKFIAAQDRRRDVGRQLANI 404
           + I+ + NT +D + K + A  + + VGR+ ANI
Sbjct: 10  QHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANI 43


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +3

Query: 216  SEVAERFKYDNLTKKVQDLVTKYEKFTGVEEIMAIQNTV 332
            S++ E+F        + DL+ K+EK +  E+   + N +
Sbjct: 1247 SQLCEKFNVQESLDSIDDLIEKFEKLSSSEKNDNLSNLI 1285


>SPBC776.07 |||mitochondrial Mam33 family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 246 NLTKKVQDLVTKYEKFTGVEEIMAIQNTVIDAQDKF 353
           N+++ V D V + + FT  E+   +QN    A+D+F
Sbjct: 114 NVSQDVTDAVPEEQDFTEFEDEQELQNQGESAEDEF 149


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 331 TVFCIAIISSTPVNFSYLVTK-SCTFLVKLSYLNLSAT 221
           T+FC   +  TP   +YL+TK  CT+ +   Y  L  T
Sbjct: 335 TIFCDEEVLKTPGLLAYLITKYRCTYSL-FDYAGLKQT 371


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +3

Query: 237 KYDNLTKKVQD--LVTKYEKFTGVEEIMAIQ-NTVIDAQDKFIAAQDRRRDVGRQLANIE 407
           K+ N  K+ +   LV K++K T  E       +T+ D    F  A+    + GR++ N+ 
Sbjct: 4   KFSNFFKEAEHPALVKKFDKSTTDESSSKEDYSTMSDLWKMFSKAKSELSN-GRRVENLT 62

Query: 408 SRLKELHAEMQNTMKGDEKYL 470
            RL  ++ +   T  GD   L
Sbjct: 63  WRLMSINLQKNLTPNGDSNTL 83


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 503 YYKLVLFSAELQVFLIPLHSILHFSM*FFQSRFY 402
           +++L+LF+A +Q +  P+   L      F  R+Y
Sbjct: 360 WFRLILFTASVQPYADPIIDYLERDKKIFAKRYY 393


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +3

Query: 171  KVDQLITKYVPATKVSEVAERFK--YDNLTKKVQDLVTKYEKFTGVEE 308
            K D ++ KY P+  +  V+E+F+   D  T+K  D +   +K + +++
Sbjct: 1120 KYDPVLDKYPPSRYLGSVSEKFQRAVDEYTQKNPDKLIASKKESKLDD 1167


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 26/134 (19%), Positives = 69/134 (51%), Gaps = 3/134 (2%)
 Frame = +3

Query: 120 RLKDKIN-LAQLNVTNREKVDQLITKYVPATKVS-EVAERFKYDNLTKKVQDLVTKYEKF 293
           +L++K++ L+++N   + +  ++ T+ +   + + E  +R K D+L+ ++++   K  K 
Sbjct: 224 KLEEKVDYLSKVNDVEQSQNVKVFTERIRFLENALEKVQREK-DSLSTEMEE--DKSNKE 280

Query: 294 TGVE-EIMAIQNTVIDAQDKFIAAQDRRRDVGRQLANIESRLKELHAEMQNTMKGDEKYL 470
              E EI  +QN + +  ++   AQD   +   ++A ++ +++E      +  + +E   
Sbjct: 281 VDYEYEIRQLQNRLDELSEELDVAQDLLTEKEDEIATLKRQIEE-KENSSSAFENEENSS 339

Query: 471 QLCTEEHKLIIQER 512
            +  +E   I+Q +
Sbjct: 340 YVHLQEDYAILQAK 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,067,967
Number of Sequences: 5004
Number of extensions: 38694
Number of successful extensions: 124
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)