Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28i17
(529 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 1.7
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 27 2.3
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi... 26 4.0
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 26 4.0
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi... 26 4.0
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 5.3
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 25 7.0
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi... 25 7.0
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 25 9.2
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5... 25 9.2
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy... 25 9.2
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 18 GFSCLTAIMNSLNKLSVYSKLVPK--NARVISTS 113
G S LT + N+ N+ S+Y KLV + A V+STS
Sbjct: 1849 GRSFLTILSNTKNRDSLYQKLVARAPGADVLSTS 1882
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 26.6 bits (56), Expect = 2.3
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = -2
Query: 339 ILQAHNQVLLCVNVLDLHAACN 274
+L +H +++ CVN ++LH C+
Sbjct: 149 LLDSHPKIIPCVNQIELHPFCS 170
>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 4.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 146 EITSSKNRTDKRVTQSNA**QGSNLCSSYTQHKTGFSGQLFKK 274
E +++N+ D QSN S + YT + FS QLFK+
Sbjct: 399 ETNTTENQKDNARGQSNKGHGFSTSLNPYTLYFKSFSSQLFKE 441
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -1
Query: 259 STESGLMLCV*RA*ITSLSLSIRLC-DSFVGSILRTSNFE 143
+ ES L CV + ++S++ S+RLC F S++R+S ++
Sbjct: 496 NVESVLNACVEKYTLSSITCSLRLCLLEFPDSLIRSSFYD 535
>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 166 ILRTSNFENHPSSVFNSALVDI 101
+LRT +N P S F +A DI
Sbjct: 180 VLRTGPIQNRPDSTFTAATTDI 201
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 313 QNLVVSL*DHGQYQLEIWIKLCIYSNMLVDLKKLTRPNNCLNK 441
QNL L Q+ ++ + S ++V++KKL + +C K
Sbjct: 1241 QNLCDFLYTRDDVQMNADVQFSVTSGLIVEIKKLAQSTDCKAK 1283
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 303 NVLDLHAACNFLNSCPLNPVLCCVYEE 223
N+L L + N CPLN +CC E
Sbjct: 475 NLLQLKFTDDVRNVCPLNLNVCCCIAE 501
>SPAC688.06c |slx4||structure-specific endonuclease subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 7.0
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Frame = +3
Query: 24 SCLTAIMNSLNKLSVYSKLVPKNARVISTSALLNTDDGWFSKLLVRRIEPTKESHSRMLS 203
SCL AI +S ++ K P + + ST +L DD +V + +
Sbjct: 316 SCLDAI-DSRSQSKKLGKETPHDYLITSTKTVLEFDD------IVTQTHRAISQVVKQAK 368
Query: 204 DKEVIYALHTHN-IRPDSVDNYLK--NYKQHVDLIHSHKAELGCELVGSW 344
D V + T++ I + +LK N +DLI S + G + GSW
Sbjct: 369 DNSVWIKILTYSAIDVEEFQLWLKRKNLNVSLDLIKSWCDKYGVLMKGSW 418
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 399 GFEKIDKAKQLFKQDSSYQLLESE 470
G E D +QL KQD YQ L+ +
Sbjct: 324 GKELKDNKEQLVKQDQKYQSLQGD 347
>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
Whi5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 252
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +3
Query: 171 PTKESHSRMLSDKEVIYALHTHNIRPDSVDNYLK 272
P + SH+ S K ++ ++ H RP+ D L+
Sbjct: 173 PFELSHASTASAKSPLFGMNYHISRPEETDESLR 206
>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 9.2
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -1
Query: 448 LESCLNNCLALSIFSNPPTYXNKCRA*SISPTDTVHDPTSSQPS 317
LE CL+ A I +N T A S+ PT TS PS
Sbjct: 58 LEDCLDRLEASPILTNEGTIKKWIAAPSVQPTLLAPRRTSPLPS 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,184,326
Number of Sequences: 5004
Number of extensions: 44430
Number of successful extensions: 137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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