Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28i15
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3...    28   1.2  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    28   1.2  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    28   1.2  
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas...    26   4.7  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    26   4.7  
SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit Mrp2...    25   6.2  
SPBC32F12.03c |gpx1||glutathione peroxidase Gpx1|Schizosaccharom...    25   8.2  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   8.2  

>SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 158

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 255 SGKEHWSSHTGTSRWCTTPRRAGIGGVLSKKW-RWF 359
           SG +H+     +  WC+T     + G+LS ++ +WF
Sbjct: 111 SGPKHYEYSLKSKTWCSTRDEGTLLGILSSEFSKWF 146


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 339  TERRQFLHVGEWCTTDLYLYVKTSAPSRFHPFFDNFLPV 223
            T R  FLH+  W   DLY    +   SR   FF NFL +
Sbjct: 1429 TFRPLFLHLHSWALEDLYETDPSGIVSR-QTFFYNFLTI 1466


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -1

Query: 317 TSGSGAPPTCTCM*RPVLLPAFTHSSITFFLSATFRDICSPVVPPTSTHLKPAS 156
           T+ + APPT        ++P  TH + T  +  T     + VVPPT TH    S
Sbjct: 104 TTTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPT-THANTTS 156


>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
           Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 496 SQPESCWECGNIAQAISVPRRL 431
           S P  C+ CGN+A  + V   L
Sbjct: 256 SAPNYCYRCGNVASVMKVDESL 277


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 358 NQRHFFDRTPPIPARRGVVHHRLVP 284
           N+ + +D+TP I AR+   H R++P
Sbjct: 99  NEGNEYDQTPDISARKRRKHFRMLP 123


>SPBC839.09c |mrp21||mitochondrial ribosomal protein subunit
           Mrp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +1

Query: 250 VKAGRSTGLHIQVQVGGAPLPDVQELAAFCQKNGVGSILTLPELYFKPS 396
           + A  +  L   V VG +     +++   CQ+N V  +      Y KPS
Sbjct: 39  IPAAETKDLGASVTVGNSLTRAFRQVDRICQRNNVPRLFRSQRFYEKPS 87


>SPBC32F12.03c |gpx1||glutathione peroxidase
           Gpx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 158

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 319 QELAAFCQKNGVGSILTLPELYFKPSNVDELVSYV 423
           +E+A FCQKN   +   L ++     NVD +  ++
Sbjct: 76  EEIAQFCQKNYGVTFPVLAKINVNGDNVDPVYQFL 110


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 287 YKSVVHHSPTCRNWRRSVKK 346
           +KS+V     C++WR  +KK
Sbjct: 153 FKSIVQCMQVCKHWRDCIKK 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,522
Number of Sequences: 5004
Number of extensions: 59203
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)