Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28i12
         (274 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   2.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   2.1  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   2.1  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    20   6.4  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    20   6.4  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    20   6.4  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    20   6.4  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    20   6.4  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    20   6.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    20   6.4  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 200 IFTYFIKLFIIIF 238
           I+ YF+ LF+II+
Sbjct: 222 IWVYFVPLFLIIY 234


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 42  FIRMILVIINMGGYNL 89
           FIR++LVI+   GY L
Sbjct: 54  FIRIVLVILLRAGYVL 69


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 200 IFTYFIKLFIIIF 238
           I+ YF+ LF+II+
Sbjct: 98  IWVYFVPLFLIIY 110


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 201 IFFKLNILTYHNDNEVKYH 145
           I   L+  T HN+N  KY+
Sbjct: 81  IISSLSNKTIHNNNNYKYN 99


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 201 IFFKLNILTYHNDNEVKYH 145
           I   L+  T HN+N  KY+
Sbjct: 81  IISSLSNKTIHNNNNYKYN 99


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 201 IFFKLNILTYHNDNEVKYH 145
           I   L+  T HN+N  KY+
Sbjct: 81  IISSLSNRTIHNNNNYKYN 99


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 201 IFFKLNILTYHNDNEVKYH 145
           I   L+  T HN+N  KY+
Sbjct: 81  IISSLSNKTIHNNNNYKYN 99


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 201 IFFKLNILTYHNDNEVKYH 145
           I   L+  T HN+N  KY+
Sbjct: 81  IISSLSNKTIHNNNNYKYN 99


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 201 IFFKLNILTYHNDNEVKYH 145
           I   L+  T HN+N  KY+
Sbjct: 81  IISSLSNKTIHNNNNYKYN 99


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 201 IFFKLNILTYHNDNEVKYH 145
           I   L+  T HN+N  KY+
Sbjct: 314 IISSLSNKTIHNNNNYKYN 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,386
Number of Sequences: 438
Number of extensions: 622
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5263398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)