Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28i11
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    46   3e-06
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    27   2.5  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   4.3  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   5.7  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    25   5.7  
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...    25   5.7  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    25   5.7  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   7.5  

>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 16/31 (51%), Positives = 23/31 (74%)
 Frame = +1

Query: 376 YEEWFEKLELPDTLASWFSITELHVWLLMVR 468
           +E W++K E+P T  SWF IT+LH+W+L  R
Sbjct: 123 FEFWYQKCEIPMTFQSWFQITQLHLWILHTR 153


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = +1

Query: 124 LKETKMLNSRV-IAQVLLQQRH-KIRNICNPGIIKCNKIYREHSTVAAE 264
           L E+K+ NS++   Q L+ +R  +I N+   GI + N+I+R+ ST+  E
Sbjct: 155 LTESKISNSQLEYQQRLINERQGEIENLTQ-GINELNEIFRDLSTIINE 202


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -1

Query: 273 IAIFSSNCAVFSINLIALDDSRVTNISNFVSLL*QYLGYYS-AVQHFCFFEII 118
           I  FS   +   +N +++    +  I  FVS   QYLG YS + Q F    +I
Sbjct: 60  ICAFSITGSGLEVNTMSIPFYLIFGIFAFVSFTTQYLGIYSFSFQPFQLLNVI 112


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = +1

Query: 304 MDQDRTRLKLTGYFLYESIHANIVYEEWFEKLELP---DTLASWFSITELHVWLLMVRYM 474
           + +D+T  ++   F Y+  H  ++ E W     LP    TL +   +T+     ++    
Sbjct: 301 LHKDKTVFQVMNLFNYDQNHKCLIAEGWCPTANLPMVQKTLRNISDLTDSQAPTIL---- 356

Query: 475 AEDIAHTAKEKKTYVK 522
             ++ HT+++  TY +
Sbjct: 357 --NVVHTSEQPPTYFR 370


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 132 NKNAEQPSNSPSIVTTTTQNSKYL 203
           +KN E+P N   I T  T NS+YL
Sbjct: 465 SKNYEKPINLRFISTPGTNNSRYL 488


>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 244 HSTVAAEDSYVKKFM--KAVGWMDQDRTRLKL 333
           H  +A++ S  K+ M   A+G  D DRTRL L
Sbjct: 237 HFPLASKTSDTKQLMVAAAIGTRDDDRTRLAL 268


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 66  FTLNKVNFLKSKFINQWKLSQRNKNAEQPSNSPS 167
           F +NK++ + S+ +N+W    RN     P  S S
Sbjct: 199 FVINKIDLVPSEVLNKWVTYLRNFFPTIPMRSAS 232


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
 Frame = +1

Query: 208  PGIIKCNKIYREHSTVAAEDS-----YVKKFMKAVGWMDQDRTRLKLTGYFLYESIHANI 372
            P  IK  K+   H  +  E       Y    M++VG +  D    +L  Y L  +     
Sbjct: 1503 PEFIKSQKMEEVHQVIVREFKRRNIVYKSHAMESVGELLSDENYRELDLYELSLNECGTF 1562

Query: 373  VYEEWFEK 396
            + +EWF+K
Sbjct: 1563 LQKEWFDK 1570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,297,051
Number of Sequences: 5004
Number of extensions: 46492
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)