Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28i04
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    29   0.50 
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    29   0.67 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   2.0  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   3.5  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   6.2  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   8.2  
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    25   8.2  

>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 282 SGRSSGSQMLDRRRRHKRIYSGMELIGNTCSSTENIIRQPT 404
           +GRS+ +  + +  R +R YSG  L G        I+R PT
Sbjct: 423 NGRSNSTGKIGKNYRPRRTYSGRLLCGPNNYEVSTIMRSPT 463


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 124  KKSTITSHTMDKDRALEEMMGKLGDFGRYQCFQFILH 234
            K + IT+   D+    E++M    + G Y+CF  IL+
Sbjct: 1530 KDAIITARDSDQTTIAEDLMKYFVEIGNYECFAAILY 1566


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 333 VCVDAVDPASVIRNCGHCH*RQHMHTSR 250
           VC D ++P++ I +CG C+   H+   R
Sbjct: 199 VCTDTINPSTSIWSCGTCYHVFHLSCIR 226


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +3

Query: 72  FNLPSMVFVSLAEFLKHKEEYHNITHHGQGSRFRRNDGKAR*FRAVPMFSIYSAYPR 242
           + L   V + +A FLK +++  N+  H Q  ++ R+D  A  +R  P+   Y+ Y R
Sbjct: 362 YGLEMFVRLLVAIFLKDRDKIVNMVSHEQWVKYLRSDVLAS-YRQ-PLVQKYTFYTR 416


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 273 FSDSGRSSGSQMLDRRRRHKRIYSGMELIGNTCSSTENII 392
           +  +GRS   ++L + R   RIYSG    GN  S +++ I
Sbjct: 414 YEGTGRSLSLKLLQQLREQSRIYSGS---GNNKSDSQSHI 450


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 207 VPMFSIYSAYPRCYDGWYAYAVFSDSGRSSGS 302
           V M+SI   Y     GW AY   SD+  ++ S
Sbjct: 616 VIMYSILMGYLLFCSGWIAYRAISDAIHNASS 647


>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +1

Query: 373 AVPKTSSGSLHNCLMYQDNDTITCTKWVFDTTYRSSSHAIXWNLXCEQRWLGS 531
           + PK+S+G +++ L   D     C +W        S   I W L     W+G+
Sbjct: 94  SAPKSSAGLINSGLRALDRSGKPCRRWEKKPISIRSISTIVWKLPL---WIGT 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,302
Number of Sequences: 5004
Number of extensions: 52200
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)