Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28i04
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0372 + 17280560-17280811,17280901-17281065,17281305-172814...    29   2.1  
09_01_0178 - 2548611-2548670,2549816-2549918,2549993-2550096,255...    29   2.1  
04_03_0797 + 19744815-19745030,19745190-19745273,19745375-197454...    28   4.8  
08_02_1274 - 25787111-25787278,25787733-25787824,25788145-257882...    27   8.4  
06_02_0037 - 10856616-10856915,10857527-10860238                       27   8.4  
04_04_1603 - 34716753-34717097,34717512-34717659,34717747-347179...    27   8.4  

>10_08_0372 +
           17280560-17280811,17280901-17281065,17281305-17281410,
           17281432-17281487,17281607-17282201,17282863-17282975,
           17283106-17283326,17284113-17284437
          Length = 610

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
 Frame = +3

Query: 51  RVFPTTNFNLPSMV--FVSLAEFLKHKEEY-HNITHHGQGSRFRRNDGKAR*FRAVPMFS 221
           ++ P T  N+  M   F S A  LK K+ +  N+  H   S  +    +           
Sbjct: 446 KIKPDTIRNIMDMKANFGSFAAALKEKDVWVMNVVPHDGPSTLKIIYDRGLIGSTHDWCE 505

Query: 222 IYSAYPRCYDGWYAYAVFSD 281
            +S YPR YD  +A+ VFSD
Sbjct: 506 AFSTYPRTYDLLHAWTVFSD 525


>09_01_0178 -
           2548611-2548670,2549816-2549918,2549993-2550096,
           2550893-2550988,2551418-2551482,2551558-2551591,
           2552469-2552540,2552567-2552644,2553416-2553477,
           2554267-2554530,2555057-2555246,2555432-2555500,
           2555613-2555669,2555746-2555846,2556029-2556146,
           2556225-2556272,2556362-2556487,2556960-2557118,
           2558119-2558216,2558324-2558416,2559741-2559937,
           2560231-2560354,2561121-2561334,2561773-2561830,
           2561955-2562433
          Length = 1022

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 473 DLHRMLX-NGIXFVNKDGWALLCKLCTCSGVFTGA 574
           D+ RM   +G+  +NKD W LLC +C   GV  GA
Sbjct: 590 DVKRMEPIDGLSRINKDRWKLLCSIC---GVAYGA 621


>04_03_0797 +
           19744815-19745030,19745190-19745273,19745375-19745473,
           19745588-19745695,19747332-19747700
          Length = 291

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 103 RLTNTIDGKLKLVVGNTRWRVQAPGVRAGGG 11
           RL    DG+ +LV G   +RV A G   GGG
Sbjct: 23  RLRQRYDGEYRLVAGCVPYRVVAAGGGGGGG 53


>08_02_1274 -
           25787111-25787278,25787733-25787824,25788145-25788230,
           25788455-25788510,25788698-25788835,25789480-25789533
          Length = 197

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 87  MVFVSLAEFLKHKEEYHNITHHGQGSRFRRNDGKA 191
           M+ V  +E +   +E HN+T HG+G + R+    A
Sbjct: 156 MMRVLSSEKVLKMQETHNVTGHGEGFKLRKGSEDA 190


>06_02_0037 - 10856616-10856915,10857527-10860238
          Length = 1003

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/75 (22%), Positives = 28/75 (37%)
 Frame = +2

Query: 359 RKYLQQYRKHHQAAYITVLCIKIMIRLLAPSGFSIQHIDLHRMLXNGIXFVNKDGWALLC 538
           ++ LQ+ +K      +  + I     L  P GF I+H D      + +   N  GW    
Sbjct: 578 KRELQKRQKLLLNLAVLAITITYQAGLTPPGGFWIEHADEEHHNGDPVLGDNHRGWYTAF 637

Query: 539 KLCTCSGVFTGAVTL 583
             C  +      VT+
Sbjct: 638 FFCNTTSFMASVVTI 652


>04_04_1603 -
           34716753-34717097,34717512-34717659,34717747-34717984,
           34718075-34718285,34718398-34718513,34718698-34718793,
           34719279-34719306
          Length = 393

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 252 RHSSEDMQNKLKTLVPPEITELS 184
           +HS+ D  +   T+VPP ++E+S
Sbjct: 369 KHSASDTSDMFSTVVPPTVSEIS 391


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,304,595
Number of Sequences: 37544
Number of extensions: 364201
Number of successful extensions: 1032
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)