Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28i04
(587 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC090999-19|AAK26156.1| 575|Caenorhabditis elegans Hypothetical... 46 3e-05
Z66567-5|CAA91492.4| 757|Caenorhabditis elegans Hypothetical pr... 35 0.037
Z47810-7|CAH10843.1| 538|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z47810-6|CAB76718.1| 504|Caenorhabditis elegans Hypothetical pr... 33 0.20
AL031264-3|CAH04705.1| 538|Caenorhabditis elegans Hypothetical ... 33 0.20
AL031264-2|CAB76735.1| 504|Caenorhabditis elegans Hypothetical ... 33 0.20
Z83228-10|CAB05732.2| 585|Caenorhabditis elegans Hypothetical p... 30 1.4
Z83228-1|CAC70093.1| 568|Caenorhabditis elegans Hypothetical pr... 30 1.4
AF110415-1|AAF21932.1| 568|Caenorhabditis elegans organic catio... 30 1.4
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr... 29 3.2
AC024751-3|AAK21513.2| 440|Caenorhabditis elegans Hypothetical ... 28 4.3
AL117204-11|CAB55126.1| 201|Caenorhabditis elegans Hypothetical... 28 5.7
Z92817-3|CAJ43914.1| 511|Caenorhabditis elegans Hypothetical pr... 27 9.9
U21323-12|AAA62554.2| 354|Caenorhabditis elegans Hypothetical p... 27 9.9
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 27 9.9
>AC090999-19|AAK26156.1| 575|Caenorhabditis elegans Hypothetical
protein Y82E9BR.16a protein.
Length = 575
Score = 45.6 bits (103), Expect = 3e-05
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 11/143 (7%)
Frame = +1
Query: 190 LGDFGRYQCFQFILHILAAMTAGMHMLSLVTVAAVPDHRCWIDGVDTNESIAAWNS---- 357
LG+ G+YQ QF L L + MH LS + +RC + D E + +
Sbjct: 11 LGEMGKYQKIQFFLVCLPTIVVSMHALSWTFASVDTPYRCRLPS-DLPEKEPYYTTLLNF 69
Query: 358 ----SEILAAVPKTSSGSLHNCLMYQD---NDTITCTKWVFDTTYRSSSHAIXWNLXCEQ 516
++ A VP + G Y D TC + +FD + + W + C++
Sbjct: 70 TKCTNDADANVPISEYGKPGVTCHYDRCTLPDNETCHEHIFDHSKVEYTAVQRWEITCDR 129
Query: 517 RWLGSFVQTVYMLGGVHWCCNFG 585
W+ + +Q Y +G + FG
Sbjct: 130 SWIKATIQAAYYVGQMAGSTTFG 152
>Z66567-5|CAA91492.4| 757|Caenorhabditis elegans Hypothetical
protein ZK455.8a protein.
Length = 757
Score = 35.1 bits (77), Expect = 0.037
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 442 CTKWVFDTTYRSSSHAIXWNLXCEQRWLGSFVQTVYMLGGVHWC 573
C +W +DT+ + WN C+ W + V Y LG + C
Sbjct: 279 CKEWEYDTSVMDRTIVTEWNRVCDNNWSRAHVHMSYSLGYLVGC 322
>Z47810-7|CAH10843.1| 538|Caenorhabditis elegans Hypothetical
protein F45E10.2b protein.
Length = 538
Score = 32.7 bits (71), Expect = 0.20
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 169 LEEMMGKLGDFGRYQCFQFILHILAAMTAGMHMLSLVTVAA 291
LE + LG FGR+Q QFIL + MH++S V +
Sbjct: 68 LESIFEGLGSFGRFQQIQFILICIPIAFVSMHVMSWTFVVS 108
>Z47810-6|CAB76718.1| 504|Caenorhabditis elegans Hypothetical
protein F45E10.2a protein.
Length = 504
Score = 32.7 bits (71), Expect = 0.20
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 169 LEEMMGKLGDFGRYQCFQFILHILAAMTAGMHMLSLVTVAA 291
LE + LG FGR+Q QFIL + MH++S V +
Sbjct: 34 LESIFEGLGSFGRFQQIQFILICIPIAFVSMHVMSWTFVVS 74
>AL031264-3|CAH04705.1| 538|Caenorhabditis elegans Hypothetical
protein F45E10.2b protein.
Length = 538
Score = 32.7 bits (71), Expect = 0.20
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 169 LEEMMGKLGDFGRYQCFQFILHILAAMTAGMHMLSLVTVAA 291
LE + LG FGR+Q QFIL + MH++S V +
Sbjct: 68 LESIFEGLGSFGRFQQIQFILICIPIAFVSMHVMSWTFVVS 108
>AL031264-2|CAB76735.1| 504|Caenorhabditis elegans Hypothetical
protein F45E10.2a protein.
Length = 504
Score = 32.7 bits (71), Expect = 0.20
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 169 LEEMMGKLGDFGRYQCFQFILHILAAMTAGMHMLSLVTVAA 291
LE + LG FGR+Q QFIL + MH++S V +
Sbjct: 34 LESIFEGLGSFGRFQQIQFILICIPIAFVSMHVMSWTFVVS 74
>Z83228-10|CAB05732.2| 585|Caenorhabditis elegans Hypothetical
protein F52F12.1a protein.
Length = 585
Score = 29.9 bits (64), Expect = 1.4
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 13/149 (8%)
Frame = +1
Query: 178 MMGKLGDFGRYQC-FQFILHILAAMTAGMHMLSLVTVAAVPDHRCWI-DGVD-----TNE 336
++ ++G++G YQ F FI+ + ++ + ++ V P H C I +G + TN+
Sbjct: 29 VLEQVGNYGTYQIVFFFIICLPTSLPSAFSAFNIPFVVGNPPHTCHIPEGKEYLRPLTND 88
Query: 337 ----SIAAWNSSEILAAVPKTSSGSLHNCLMYQDN-DTITCTK-WVFDTTYRSSSHAIXW 498
S +N ++I TS+ Y D + C W +D + S +
Sbjct: 89 TQILSCKQYNETQINVFRAFTSAP----VDTYSDRISLVPCQNGWDYDNSTYLDSLVTEF 144
Query: 499 NLXCEQRWLGSFVQTVYMLGGVHWCCNFG 585
NL C+Q+ T + +G C FG
Sbjct: 145 NLVCDQQAWIEISTTSFYVGSFIGNCLFG 173
>Z83228-1|CAC70093.1| 568|Caenorhabditis elegans Hypothetical
protein F52F12.1b protein.
Length = 568
Score = 29.9 bits (64), Expect = 1.4
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 13/149 (8%)
Frame = +1
Query: 178 MMGKLGDFGRYQC-FQFILHILAAMTAGMHMLSLVTVAAVPDHRCWI-DGVD-----TNE 336
++ ++G++G YQ F FI+ + ++ + ++ V P H C I +G + TN+
Sbjct: 12 VLEQVGNYGTYQIVFFFIICLPTSLPSAFSAFNIPFVVGNPPHTCHIPEGKEYLRPLTND 71
Query: 337 ----SIAAWNSSEILAAVPKTSSGSLHNCLMYQDN-DTITCTK-WVFDTTYRSSSHAIXW 498
S +N ++I TS+ Y D + C W +D + S +
Sbjct: 72 TQILSCKQYNETQINVFRAFTSAP----VDTYSDRISLVPCQNGWDYDNSTYLDSLVTEF 127
Query: 499 NLXCEQRWLGSFVQTVYMLGGVHWCCNFG 585
NL C+Q+ T + +G C FG
Sbjct: 128 NLVCDQQAWIEISTTSFYVGSFIGNCLFG 156
>AF110415-1|AAF21932.1| 568|Caenorhabditis elegans organic cation
transporter 1 protein.
Length = 568
Score = 29.9 bits (64), Expect = 1.4
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 13/149 (8%)
Frame = +1
Query: 178 MMGKLGDFGRYQC-FQFILHILAAMTAGMHMLSLVTVAAVPDHRCWI-DGVD-----TNE 336
++ ++G++G YQ F FI+ + ++ + ++ V P H C I +G + TN+
Sbjct: 12 VLEQVGNYGTYQIVFFFIICLPTSLPSAFSAFNIPFVVGNPPHTCHIPEGKEYLRPLTND 71
Query: 337 ----SIAAWNSSEILAAVPKTSSGSLHNCLMYQDN-DTITCTK-WVFDTTYRSSSHAIXW 498
S +N ++I TS+ Y D + C W +D + S +
Sbjct: 72 TQILSCKQYNETQINVFRAFTSAP----VDTYSDRISLVPCQNGWDYDNSTYLDSLVTEF 127
Query: 499 NLXCEQRWLGSFVQTVYMLGGVHWCCNFG 585
NL C+Q+ T + +G C FG
Sbjct: 128 NLVCDQQAWIEISTTSFYVGSFIGNCLFG 156
>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical protein
C08H9.2 protein.
Length = 1220
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 133 TITSHTMDKDRALEEMMGKLGDF 201
T+T T + D+ALE + GKLG++
Sbjct: 973 TVTGQTENVDQALEALRGKLGEY 995
>AC024751-3|AAK21513.2| 440|Caenorhabditis elegans Hypothetical
protein Y18H1A.10 protein.
Length = 440
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 359 RKYLQQYRKHHQAAYITVLCIKIMIRLLAPSGFSIQHIDLHRMLXNGIXFVNKD 520
R++ +Q + H + + LC+ + APS S H D + I F NKD
Sbjct: 25 RRFQRQLKSHFRTVHAFELCMLAELNKRAPSARS-AHPDSRNIPIGSITFHNKD 77
>AL117204-11|CAB55126.1| 201|Caenorhabditis elegans Hypothetical
protein Y116A8C.20 protein.
Length = 201
Score = 27.9 bits (59), Expect = 5.7
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +2
Query: 347 HGTHRKYLQQYRKHHQAAYITVLCIKIMIRLLAPSGFSIQHIDLHRML 490
HG H QQ +K+H+ Y TVLC K G Q I HR +
Sbjct: 113 HGVHELRCQQAKKNHR-NYKTVLCDKFTTTGYCKYGIRCQFI--HRSM 157
>Z92817-3|CAJ43914.1| 511|Caenorhabditis elegans Hypothetical
protein W08G11.3b protein.
Length = 511
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = +3
Query: 279 DSGRSS--GSQMLDRRRRHKRIY 341
DSGR S GS+ D RRRHK+++
Sbjct: 2 DSGRRSRSGSRDRDSRRRHKKVH 24
>U21323-12|AAA62554.2| 354|Caenorhabditis elegans Hypothetical
protein C45G9.11 protein.
Length = 354
Score = 27.1 bits (57), Expect = 9.9
Identities = 6/20 (30%), Positives = 16/20 (80%)
Frame = +3
Query: 216 FSIYSAYPRCYDGWYAYAVF 275
F+++ +P+ ++GW+A+ +F
Sbjct: 228 FALWEPFPKSFNGWFAHPLF 247
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = +1
Query: 379 PKTSSGSLHNCLMYQDNDTITCTKWVFDTTYRSSSHAIXWNLXCEQRWLGSFVQTVYMLG 558
P T S N + + TK D+T S SH N+ CE + V+ +G
Sbjct: 1514 PGTYSCECENGFLGDGYQCVPTTKKPCDSTQSSKSHCSESNMSCEVDTVDGSVECKECMG 1573
Query: 559 G 561
G
Sbjct: 1574 G 1574
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,328,838
Number of Sequences: 27780
Number of extensions: 304863
Number of successful extensions: 766
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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