Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28i02
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    27   1.1  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   1.4  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   1.4  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   5.8  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    24   5.8  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    24   7.6  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    24   7.6  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    24   7.6  

>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -2

Query: 91  NEKTRKNFVPHYSKFSYPKLHK----CFRSENNS 2
           + KTR++F PH S  S+  LH+     F SEN S
Sbjct: 204 DSKTRQSFPPHSSSSSHNSLHEPVIYDFSSENPS 237


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 136 YMIKTPAR*TNSSSYNEKTRKNFVPHYSKFSYPKL 32
           Y IK P   TN S    K +  F+P Y+K   P+L
Sbjct: 408 YPIKPP---TNISEIPRKLKSGFIPPYAKRVVPRL 439


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 280 FTTSIIRDSFQAIHFIRITSKPHIPLVQRTTPSIS 176
           F   + RD +    F+    KPH  LV+ + PS++
Sbjct: 80  FDFDVCRDCYAKQAFLHPCPKPHFVLVRSSIPSVA 114


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 103 SSSYNEKTRKNFVPHYSKFSY 41
           SSSY E+TRK F  H++ F +
Sbjct: 78  SSSY-EQTRKPFFHHFNPFEF 97


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 44  REFRIMWYEILPSFFIITAAVGLPGWGLY 130
           +EF  +W  IL + FII++   +   GLY
Sbjct: 342 KEFYELWNSILQNHFIISSRNIIDSLGLY 370


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 85  KTRKNFVPHYSKFSYPKLHKCFRSEN 8
           +T K  +P + +  YP LHK F SEN
Sbjct: 793 RTVKTLLPAFKEQVYPILHK-FVSEN 817


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 61  HYSKFSYPKLHKCFRSENNS 2
           H SK+S P+LH  F    N+
Sbjct: 142 HASKYSVPELHTTFLPNTNA 161


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +1

Query: 19  ENTCVTWDTRI*NNVVRNSSEFFHYNCCCW 108
           + + + WD       +R+    F  +CCCW
Sbjct: 276 DKSVILWDAFT-GEKLRDYKHGFSVSCCCW 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,387,004
Number of Sequences: 5004
Number of extensions: 25588
Number of successful extensions: 46
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)