Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28h23
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    33   0.019
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    25   5.1  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    25   5.1  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.7  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    25   8.9  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   8.9  
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    25   8.9  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    25   8.9  

>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 33.5 bits (73), Expect = 0.019
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 106 ADLPRHRLVQDQRIQIRLSVHCPNERDRISGARSAELRVHIRDLREGSL 252
           A L  H ++    ++ R + HCP E  + S  RS+ L+ HI  + EG++
Sbjct: 217 AHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNM 265


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
            1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +1

Query: 10   NERNENARFHCAINRVFAVGLQRPKPRPKSRPADLPRHRLVQDQR 144
            NE NENA         F+    R   RP +R     +H  +QD R
Sbjct: 954  NEENENASRTSGARFSFSSKASRLSARPSARTVPPLQHISIQDLR 998


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 7   LNERNENARFHCAINRVFAVGLQRPKPRPKSRPADLPRH 123
           L  R   A F+   +R    GLQ P+PR +S    LP H
Sbjct: 246 LIRRGYYAEFNVMYDRGTWFGLQAPEPRVESILMTLPLH 284


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 104 QLTYRDIVLYKINEYKYG 157
           QL Y D++LY IN Y  G
Sbjct: 426 QLHYHDLILYVINTYYSG 443


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 510 RLLLLHVKKIINKHIXNLSDFNE*VQQKSTIKR 412
           R +LL   +I+NKH+  L D N  V  + ++ R
Sbjct: 176 RSILLEAARILNKHVLALIDDNVAVAIEYSLSR 208


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 37  HCAINRVFAVGLQRPKPRPK 96
           + A+NRV+  GL  P  +PK
Sbjct: 789 NAAVNRVYEKGLSNPSLKPK 808


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 254 TDGNGGYPIVKSGGVGQKFVKLKLKSQRGHGFNFTVTIYG 373
           T GNGGY ++K G    +     L S      +  V +YG
Sbjct: 45  TYGNGGYTVLKDGFQVSRTSDYILYSVEAEHIDKVVALYG 84


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 137 INEYKYGFPFIVRTSEIEYPEPGQQNFAYISAIYVKD 247
           + E K+GF   ++   +EY +  ++N + IS +Y +D
Sbjct: 643 LKEGKWGFEDFLKQGLVEYVDVNEENDSLIS-VYERD 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,789,070
Number of Sequences: 5004
Number of extensions: 32556
Number of successful extensions: 92
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)