Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28h08
(515 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 150 6e-37
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 149 1e-36
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 142 2e-34
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 140 6e-34
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 54 5e-08
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 38 0.004
02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810 28 3.9
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 28 5.1
03_06_0131 - 31900700-31900992,31901039-31901720 28 5.1
01_04_0119 - 16230375-16231093,16231298-16231378,16231634-16231997 27 6.8
11_04_0441 + 17781533-17781775,17782007-17782114,17782386-177824... 27 8.9
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 27 8.9
03_06_0105 + 31675083-31675313,31676171-31676815 27 8.9
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111... 27 8.9
02_01_0176 + 1207792-1208081,1208212-1208329,1208495-1208668,120... 27 8.9
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 27 8.9
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 150 bits (364), Expect = 6e-37
Identities = 74/134 (55%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
Frame = +3
Query: 120 ITMPAKAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGC 293
+TM KAV VL V GT+ F Q+ + P V+G V GL G HGFH+H GD TNGC
Sbjct: 117 LTM-VKAVVVLGSSEIVKGTIHFVQEGD-GPTTVTGSVSGLKPGLHGFHIHALGDTTNGC 174
Query: 294 TSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRT 473
S G H+NP ++HG P RH GDLGN+ A ED GV + + DSQI L GPNSIIGR
Sbjct: 175 MSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGED-GVANIHVVDSQIPLTGPNSIIGRA 233
Query: 474 LXVHADPDDLGLGG 515
+ VHADPDDLG GG
Sbjct: 234 VVVHADPDDLGKGG 247
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 149 bits (361), Expect = 1e-36
Identities = 74/129 (57%), Positives = 84/129 (65%), Gaps = 2/129 (1%)
Frame = +3
Query: 135 KAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGA 308
KAV VL V GT+FF Q+ + P V+G V GL G HGFHVH GD TNGC S G
Sbjct: 3 KAVAVLASSEGVKGTIFFSQEGD-GPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGP 61
Query: 309 HFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLXVHA 488
HFNP ++HG P RH GDLGNI A D GV V++ DSQI L G +SIIGR + VHA
Sbjct: 62 HFNPTGKEHGAPQDENRHAGDLGNITAGAD-GVANVNVSDSQIPLTGAHSIIGRAVVVHA 120
Query: 489 DPDDLGLGG 515
DPDDLG GG
Sbjct: 121 DPDDLGKGG 129
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 142 bits (344), Expect = 2e-34
Identities = 71/129 (55%), Positives = 80/129 (62%), Gaps = 2/129 (1%)
Frame = +3
Query: 135 KAVCVLRG--DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGA 308
KAV VL+G V G V Q D++ P V+ V GLT G HGFH+HEFGD TNGC S G
Sbjct: 53 KAVAVLKGTSQVEGVVTLTQ-DDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGP 111
Query: 309 HFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLXVHA 488
HFNP HG P VRH GDLGNI A GV + +I D QI L GPNS++GR VH
Sbjct: 112 HFNPNNLTHGAPEDEVRHAGDLGNIVA-NAEGVAEATIVDKQIPLSGPNSVVGRAFVVHE 170
Query: 489 DPDDLGLGG 515
DDLG GG
Sbjct: 171 LEDDLGKGG 179
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 140 bits (339), Expect = 6e-34
Identities = 66/117 (56%), Positives = 76/117 (64%)
Frame = +3
Query: 162 VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGG 341
V+G + F Q V G V GL G HGFH+H FGD TNGC S G HFNP + HG
Sbjct: 23 VAGALHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGA 82
Query: 342 PSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLXVHADPDDLGLG 512
PS RHVGDLGNI A +D GV + I+D QISL GP+SI+GR + VHAD DDLG G
Sbjct: 83 PSDDERHVGDLGNIVANKD-GVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGRG 138
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 54.4 bits (125), Expect = 5e-08
Identities = 39/127 (30%), Positives = 59/127 (46%)
Frame = +3
Query: 117 NITMPAKAVCVLRGDVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCT 296
N + + AV +G V V Q +V GL+ GKHG+ ++EFGD T G
Sbjct: 160 NDFLVSAAVAEFKGPVIFGVVRLAQVNMELAIVEATFSGLSPGKHGWSINEFGDLTRGAE 219
Query: 297 SAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTL 476
S G +NP P +GDLG +EA E G + S ++ + +IGR++
Sbjct: 220 STGKVYNPSDYRSNKP------LGDLGTLEAGE-KGEAQFSASKEKLKV---VDLIGRSI 269
Query: 477 XVHADPD 497
++A D
Sbjct: 270 ALYATED 276
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +3
Query: 201 SPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAG 305
S + V V GL HGFHVH G TNGC G
Sbjct: 35 SLITVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810
Length = 472
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +3
Query: 276 DNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPN 455
D TS GAH +P + H PSS + + + S T VS++ ++ PN
Sbjct: 15 DIVKAATSPGAHSSPLRPAHSSPSSTLSEASNTSS------SSATSVSLKRARAPRKRPN 68
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 447 GPNSIIGRTLXVHADPDDLGLGG 515
GP + +GR L +DP+D+G G
Sbjct: 1048 GPEATVGRPLLSSSDPEDIGTEG 1070
>03_06_0131 - 31900700-31900992,31901039-31901720
Length = 324
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 369 DLGNIEAIEDSGVTKVSIQDSQISLHGPNS 458
D+ ++ + DSG +I +S HGPNS
Sbjct: 120 DVDHLSILTDSGAVHRAISGEPVSEHGPNS 149
>01_04_0119 - 16230375-16231093,16231298-16231378,16231634-16231997
Length = 387
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 273 GDNTNGCTSAGAHFNPEKQDHGGPSSAVRHV 365
G+N NG S G H N + G P S + +V
Sbjct: 111 GNNNNGYRSQGVHANESWRIPGQPDSCIENV 141
>11_04_0441 +
17781533-17781775,17782007-17782114,17782386-17782471,
17782546-17782807,17782921-17783120,17783770-17784012,
17784118-17784394,17784625-17784759,17784880-17784960,
17785311-17785406,17785661-17785756,17785834-17785890,
17785967-17786035,17786154-17786240,17786534-17786635,
17786730-17786819,17786900-17786980,17787573-17787653,
17787761-17787856,17787937-17787993,17788093-17788137,
17788218-17788346
Length = 906
Score = 27.1 bits (57), Expect = 8.9
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +1
Query: 169 ELFSSISRMKSHLLLFLERSRA*LRVNTVSMCTNLVTTQTVAHQLELISTLKNKI--MVV 342
+L SI R+ ++++ + + S A R+ VS C L+ H +LIS +++ + MVV
Sbjct: 388 DLRPSILRLINNIIGYWKDSEA--RIKVVSFCHMLIQLAISTHNDKLISFVQDNLIPMVV 445
Query: 343 PVLLY 357
L++
Sbjct: 446 RCLIF 450
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +3
Query: 210 VVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRH 362
++S V+ +GK G ++H GC G + + H P++A H
Sbjct: 488 LISNAVKFTHEGKVGINLHVLDKQLPGCRIEGGQLH--SKAHSAPAAAAEH 536
>03_06_0105 + 31675083-31675313,31676171-31676815
Length = 291
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 258 HVHEFGDNTNGCTSAGAHFNPEKQDHGGP 344
HVH + T GC + AH +GGP
Sbjct: 219 HVHPYTPYTFGCVTPLAHLTHSGYGYGGP 247
>03_01_0141 +
1116833-1117082,1117658-1118574,1119417-1119579,
1119668-1120497,1120562-1120570
Length = 722
Score = 27.1 bits (57), Expect = 8.9
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +3
Query: 285 NGCTSAGAHFNP---EKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDS--QISLHG 449
N C HF+ E++DH G +A RH D D+G+ + +S + G
Sbjct: 233 NPCRFNIGHFDSVQDEQKDHAGFQTAYRHCSDWN--RCTNDTGIVGNYLANSSGETCNVG 290
Query: 450 PNSIIGR 470
NSI GR
Sbjct: 291 ENSITGR 297
>02_01_0176 +
1207792-1208081,1208212-1208329,1208495-1208668,
1209588-1209751,1209861-1209948,1210125-1210178,
1210798-1210884
Length = 324
Score = 27.1 bits (57), Expect = 8.9
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +3
Query: 174 VFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSA 353
V+ ++Q EK + G + KGKH H +E T A E++D G PS+A
Sbjct: 30 VWLEEQYEKVEKIGEGTYGVVYKGKHR-HTNE--------TIALKKIRLEQEDEGVPSTA 80
Query: 354 VRHVGDLGNIE 386
+R + L ++
Sbjct: 81 IREISLLKEMQ 91
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 384 EAIEDSGVTKVSIQDSQISLHGPNSIIGR 470
E +E G++ +IQD Q + PNS+ G+
Sbjct: 2097 EELEQEGMSSSAIQDLQPEMQPPNSVQGQ 2125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,762,545
Number of Sequences: 37544
Number of extensions: 287626
Number of successful extensions: 798
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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