Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28h06
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 210 9e-56
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 1.6
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 27 1.6
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 27 2.1
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 26 3.7
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 26 4.9
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 25 6.5
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos... 25 6.5
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 8.6
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 210 bits (514), Expect = 9e-56
Identities = 97/147 (65%), Positives = 117/147 (79%), Gaps = 1/147 (0%)
Frame = +2
Query: 161 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 340
YK+AD LA +GRKE+ +AE EMPGL+A R KYA ++ LKGARIAG LHMT+QTAVLIET
Sbjct: 6 YKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVLIET 65
Query: 341 LIELGAEVQWSSSNIYSTQDEXXXXXXXXXIPIYAWKGETDDEYIWCIEQTL-IFPDGKP 517
L+ LGAEV WSS NIYSTQD +P++AWKGET++EY+WCIEQ L FP GKP
Sbjct: 66 LVALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWKGETEEEYLWCIEQQLKSFPSGKP 125
Query: 518 LNMILDDGGDLTNLVHTKYPDLLKDVK 598
LNMILDDGGDLT LVH ++P+LL D++
Sbjct: 126 LNMILDDGGDLTALVHERHPELLVDIR 152
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 600 LFTSFKRSGYLVWTKFVKSPPSSKIILRGF 511
L+ F++ G L + K VK P + + + RGF
Sbjct: 293 LYNHFRQFGPLAYAKLVKDPATDRSLGRGF 322
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 27.5 bits (58), Expect = 1.6
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +2
Query: 59 PIYFRYFNKNNLKRKQQVNLP*VYQTLYYKMKPPYKIADEKL--AEWGRKEIMLAEKEMP 232
P YF + KN + LP YQ + + PPY KL G KE +A + P
Sbjct: 8 PYYFTH-EKNLNNASKYSELPIAYQEIPLQSLPPYPKVASKLKGVVAGGKENNIASFQKP 66
Query: 233 GLMACRRKYAPA 268
A R Y P+
Sbjct: 67 SSKA-TRPYIPS 77
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = -3
Query: 292 YSGTFEYFSWSIFPTTCHKAWHFFLC*HNFFSAPFSQFLVSDFVRRLHFVVQSLIY 125
Y + ++W F T +K H+FL H + P + F+ F V S+++
Sbjct: 356 YDDWWNCWTWDQFARTWNKPVHYFLLRHVY--VPLNSFMSKSLSTFFTFFVSSVLH 409
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 603 YLFTSFKRSGYLVWTKFVKSPPSSKI 526
+L+T SG +VW+ V++P S KI
Sbjct: 312 FLYTDKVSSGPVVWSYVVENPESKKI 337
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 4.9
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +1
Query: 202 RNYVSRERNARPYGMSSEICSS*NTQRCQNSRQLTHDSTNSGSY*DFNRIGSRGTMVQQ* 381
R+Y R ++PY S SS S ++ STNS N SR T + +
Sbjct: 90 RSYSGNPRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSVATSLNYQSSRETGISKD 149
Query: 382 H 384
H
Sbjct: 150 H 150
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 417 WLPXEYPSMPGREKLMTSIF 476
+LP EYP MP + +T I+
Sbjct: 56 FLPDEYPMMPPNVRFLTKIY 75
>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 196
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 252 RRHAIRPGISFSANIISFRPHSANFSS 172
R A++PG + +I +RP NF+S
Sbjct: 31 RERAVKPGYTAPEDIKRYRPGRGNFAS 57
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 32 RERVLQYQVPIYFRYFNKNNLKRKQQVNL 118
+ +L+ V YFRY + +LK +Q++ L
Sbjct: 668 QNELLRRSVDTYFRYIFQTDLKLEQRIKL 696
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,073
Number of Sequences: 5004
Number of extensions: 53371
Number of successful extensions: 134
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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