Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28h04
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    27   2.6  
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    26   4.5  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   6.0  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   7.9  

>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = +2

Query: 47  CVLCEFVLKEIDDQIK--DKHNDDEIKKAVHGICKHMPKSVSAECDQFVEKYADLV-ISL 217
           C  CE + + ++ ++K  +K N   I        K   +S     D+ V K  +   + L
Sbjct: 247 CAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVEL 306

Query: 218 LAQELDPSEVCEELK 262
           +A + DPSE+  ELK
Sbjct: 307 VAIKSDPSELSPELK 321


>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 56  CEFVLKEIDDQIKDKHNDDEIKKAVHGICK 145
           CE  LKEI+ ++K   N ++I K +  + +
Sbjct: 30  CEATLKEIEQRLKSIKNIEKITKTIKTVAQ 59


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 146  HMPKSVSAECDQFVEKYADLVISLLAQELDPSE 244
            HM  +  A+C +F+ KY D+ I     E++ SE
Sbjct: 2034 HMDNAHLAKCAEFINKYPDIDIDF---EIEDSE 2063


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 552 AVSVRPQNPILWQTPFAP 499
           A S  P NP  WQ P AP
Sbjct: 430 ASSAAPSNPAPWQQPAAP 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,971,608
Number of Sequences: 5004
Number of extensions: 33600
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)