Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28h04
(572 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0076 + 627796-627877,628706-628944,629129-629326,629415-62... 60 1e-09
01_01_0462 + 3422352-3422439,3423057-3423241,3423333-3423530,342... 50 1e-06
05_01_0273 + 2115257-2115589,2115706-2115766,2115876-2115970,211... 50 2e-06
05_03_0566 - 15521494-15521511,15521550-15521747,15521856-155220... 44 1e-04
01_02_0039 - 10490522-10490606,10490674-10490810,10491107-104912... 38 0.006
05_07_0145 + 28012268-28012624,28012734-28012794,28013758-280138... 37 0.013
11_06_0606 + 25432471-25432517,25433098-25433173,25433272-254334... 35 0.053
01_05_0795 + 25287449-25287967,25288078-25288138,25288640-252887... 33 0.16
01_06_0158 - 27079262-27079346,27079662-27079750,27080540-270806... 32 0.28
01_06_1830 + 40194257-40194472,40195797-40196159,40196420-40196950 29 2.0
07_01_0305 - 2181727-2184793,2185635-2185945 29 2.6
06_03_0562 + 22188780-22188910,22189848-22190415 29 3.5
07_03_1323 + 25813770-25814006,25814147-25814287,25814465-258145... 28 4.6
06_03_1049 + 27173732-27173902,27175235-27175291,27176311-271763... 28 4.6
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 28 4.6
01_01_0660 + 5029070-5029177,5029303-5029398,5029494-5029556,502... 28 4.6
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 28 6.1
06_01_1022 + 7992901-7994676 27 8.0
03_05_0148 - 21275375-21275540,21275621-21275733,21276394-21276480 27 8.0
>12_01_0076 +
627796-627877,628706-628944,629129-629326,629415-629474,
629596-629739,631700-631864,632636-632734,633114-633182,
633274-633370,633994-634085,635021-635152,635446-635526,
636284-636400,636497-636598
Length = 558
Score = 60.1 bits (139), Expect = 1e-09
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 1/167 (0%)
Frame = +2
Query: 38 SNVCVLCEFVLKEIDDQIKDKHNDDEIKKAVHGICKHMPKSVSAECDQFVEKYADLVISL 217
S++C CE + E + + +K D+I +H C S +C + ++ YA LV +
Sbjct: 64 SSLCSACENITSEAVNFLSEKQIQDKIMTILHDTCSQT-FSFEQKCLETMDSYATLVFAK 122
Query: 218 LAQELDPSEVCEELKLCKPESXXXXXXXXXXXXCAVCETVVMAVKKVLKNEKLDRNIVHI 397
+A E+ P E C++ LC+ C C ++ + LK+ + I+ +
Sbjct: 123 IA-EIKPDEFCKQYGLCR--DMALLSAMKSESTCVFCHHIIDEIMSKLKDPDAEFEIIQL 179
Query: 398 IEKSCGLLPAKYNAQCHAMLEIYGESIIHLIEXFGAKG-VCQRIGFC 535
+ K C + + QC M+ Y ++ E F K VC I C
Sbjct: 180 LLKECNKIEG-HQQQCKRMVLQYVPLVLVNGEKFLEKNDVCAMIQAC 225
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/80 (27%), Positives = 42/80 (52%)
Frame = +2
Query: 29 KSQSNVCVLCEFVLKEIDDQIKDKHNDDEIKKAVHGICKHMPKSVSAECDQFVEKYADLV 208
KS+S CV C ++ EI ++KD + EI + + C + + +C + V +Y LV
Sbjct: 148 KSEST-CVFCHHIIDEIMSKLKDPDAEFEIIQLLLKECNKI-EGHQQQCKRMVLQYVPLV 205
Query: 209 ISLLAQELDPSEVCEELKLC 268
+ + L+ ++VC ++ C
Sbjct: 206 LVNGEKFLEKNDVCAMIQAC 225
>01_01_0462 +
3422352-3422439,3423057-3423241,3423333-3423530,
3423617-3423676,3424022-3424171
Length = 226
Score = 50.0 bits (114), Expect = 1e-06
Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 1/169 (0%)
Frame = +2
Query: 32 SQSNVCVLCEFVLKEIDDQIKDKHNDDEIKKAVHGICKHMPKSVSAECDQFVEKYADLVI 211
+ +C LCE E ++ EI +H C ++ + +C V+ Y L
Sbjct: 46 ANGKLCQLCEQYSTEALFYLQQNETQTEILSILHHACANVGP-LKQQCITLVDYYIPLFF 104
Query: 212 SLLAQELDPSEVCEELKLCKPESXXXXXXXXXXXXCAVCETVVMAVKKVLKNEKLDRNIV 391
L + P + CE + LC+ + C +C V++ V +LK+ + IV
Sbjct: 105 -LEVSMVTPEKFCESVHLCRKGTMLRLPSRGDT--CGICHHVLVEVLIMLKDPDMQLEIV 161
Query: 392 HIIEKSCGLLPAKYNAQCHAMLEIYGESIIHLIEXF-GAKGVCQRIGFC 535
I K+C Y QC M+ Y I+ + F VC I C
Sbjct: 162 EIFLKACSKAD-NYVQQCKKMVLEYTPLILVKSQKFLETTDVCSTIHAC 209
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = +2
Query: 32 SQSNVCVLCEFVLKEIDDQIKDKHNDDEIKKAVHGICKHMPKSVSAECDQFVEKYADLVI 211
S+ + C +C VL E+ +KD EI + C V +C + V +Y L++
Sbjct: 132 SRGDTCGICHHVLVEVLIMLKDPDMQLEIVEIFLKACSKADNYVQ-QCKKMVLEYTPLIL 190
Query: 212 SLLAQELDPSEVCEELKLCK 271
+ L+ ++VC + CK
Sbjct: 191 VKSQKFLETTDVCSTIHACK 210
>05_01_0273 +
2115257-2115589,2115706-2115766,2115876-2115970,
2116072-2116184,2116278-2116551,2116923-2117036,
2117169-2117233,2117325-2117466,2117547-2117666,
2118153-2118241,2118349-2118433
Length = 496
Score = 49.6 bits (113), Expect = 2e-06
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Frame = +2
Query: 161 VSAECDQFVEKYADLVISLLAQELDPSEVCEELKLCK----------PESXXXXXXXXXX 310
+S EC + V +Y +++++LL + DP +VC ++ LC ES
Sbjct: 308 ISTECKEVVSEYGEMILNLLIAQTDPQKVCSQVGLCMFDGKRSVSNGIESVVDKENLGSD 367
Query: 311 XXCAVCETVVMAVKKVLKNEKLDRNIVHIIEKSCGLLPA---KYNAQCH 448
C+VCE V+ ++ L+ K I++ + C LP+ + CH
Sbjct: 368 AMCSVCEMAVVWIENQLRENKTKELILNYANQLCERLPSPNGESTVSCH 416
>05_03_0566 -
15521494-15521511,15521550-15521747,15521856-15522037,
15522643-15522721
Length = 158
Score = 43.6 bits (98), Expect = 1e-04
Identities = 29/117 (24%), Positives = 44/117 (37%)
Frame = +2
Query: 29 KSQSNVCVLCEFVLKEIDDQIKDKHNDDEIKKAVHGICKHMPKSVSAECDQFVEKYADLV 208
K +C +CE E + + EI +H C P S EC + V+ Y L
Sbjct: 41 KVDPQLCQICEEFATEALFYLNENETQVEIIATLHQACSKFP-SFKLECTKLVDYYVSLF 99
Query: 209 ISLLAQELDPSEVCEELKLCKPESXXXXXXXXXXXXCAVCETVVMAVKKVLKNEKLD 379
+ + L P E CE + LC C +C VV + L+N ++
Sbjct: 100 FTKVTS-LSPEEFCESVSLC--HKVTFIRLPRHEDSCDLCHEVVDEILTDLENPDVE 153
>01_02_0039 -
10490522-10490606,10490674-10490810,10491107-10491248,
10491355-10491419,10491528-10491641,10491846-10492119,
10492215-10492327,10492405-10492499,10492602-10492662,
10492774-10493103
Length = 471
Score = 37.9 bits (84), Expect = 0.006
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 161 VSAECDQFVEKYADLVISLLAQELDPSEVCEELKLC 268
VS EC Q V Y D+++ +L + P ++C ++ LC
Sbjct: 307 VSMECKQVVRDYGDMILEMLIAQASPMKLCSQIGLC 342
>05_07_0145 +
28012268-28012624,28012734-28012794,28013758-28013852,
28013944-28014056,28014436-28014604,28014677-28014716,
28014797-28014861,28015485-28015598,28015687-28015751,
28015927-28016083,28016167-28016286,28016447-28016535,
28016631-28016715
Length = 509
Score = 36.7 bits (81), Expect = 0.013
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 161 VSAECDQFVEKYADLVISLLAQELDPSEVCEELKLC 268
VS EC V +Y ++ LL E PS++C ++ LC
Sbjct: 316 VSQECKTVVSQYGQQILDLLLAETQPSKICSQVGLC 351
>11_06_0606 +
25432471-25432517,25433098-25433173,25433272-25433448,
25433576-25433653,25433749-25433853,25434042-25434108,
25434219-25434280,25434371-25434510,25434717-25434843,
25434917-25435031,25435220-25435308,25435699-25435782,
25435961-25436737
Length = 647
Score = 34.7 bits (76), Expect = 0.053
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -2
Query: 436 VVFGGQKSTRLLDDVHDVAVELLVFEDL-LHGHH 338
++FGGQ ++ L+DVH + E +V+ + HGHH
Sbjct: 272 LIFGGQSKSKTLNDVHALDFETMVWSRVKTHGHH 305
>01_05_0795 +
25287449-25287967,25288078-25288138,25288640-25288734,
25288827-25288939,25289480-25289648,25289777-25289816,
25289906-25289970,25290150-25290263,25290398-25290462,
25290572-25290725,25290798-25290914,25292489-25292545
Length = 522
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 170 ECDQFVEKYADLVISLLAQELDPSEVCEELKLCKPE 277
EC Q V ++ ++ LL + P++VC ++ LCK +
Sbjct: 373 ECKQVVARHGHEMLELLQDKTPPAQVCSKIGLCKSD 408
>01_06_0158 -
27079262-27079346,27079662-27079750,27080540-27080659,
27080738-27080894,27081167-27081231,27081323-27081436,
27082109-27082178,27082412-27082642,27082963-27083039,
27083143-27083237,27084514-27084574,27084678-27085073
Length = 519
Score = 32.3 bits (70), Expect = 0.28
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 161 VSAECDQFVEKYADLVISLLAQELDPSEVCEELKLC 268
VS EC V +Y ++ L E P++VC + LC
Sbjct: 326 VSQECKAVVSQYGQQILDQLRAETKPAKVCSSVGLC 361
>01_06_1830 + 40194257-40194472,40195797-40196159,40196420-40196950
Length = 369
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -2
Query: 505 RAKLFDEVNDAFAVNLQHCVTLSVVFG-GQKSTRLLDDVHDVAVELLVFEDLLHGHHHC 332
R + VN+AFA V F G+K LLD V VAV+ F H HC
Sbjct: 90 RTVIITSVNEAFARPNSLLVLFRESFAAGEKIAHLLDHVLVVAVDPAAFHHCRAVHPHC 148
>07_01_0305 - 2181727-2184793,2185635-2185945
Length = 1125
Score = 29.1 bits (62), Expect = 2.6
Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 2/132 (1%)
Frame = +2
Query: 32 SQSNVCVLCEFVLKEIDDQIKDKHNDDEIKKAVHGICKHMPKSVSAECDQFVEKYADLVI 211
S +N+ VLC V+ I+D++ D +++K G+ H ++ Q +EK +I
Sbjct: 827 SMTNLQVLCHVVVSGIEDELMDIGKLLQLRKL--GVVFHGDQNSFKHLVQAIEKLHKSLI 884
Query: 212 SL-LAQEL-DPSEVCEELKLCKPESXXXXXXXXXXXXCAVCETVVMAVKKVLKNEKLDRN 385
SL + E+ D E ++ + +P + C + + +K++ + KL
Sbjct: 885 SLSIRVEVPDGCENFPDMNMAEPTAFSYPKLLESLNICGIRCGLPRWIKELSRLAKLTLC 944
Query: 386 IVHIIEKSCGLL 421
H+ E+ ++
Sbjct: 945 DTHLGEQDMAVV 956
>06_03_0562 + 22188780-22188910,22189848-22190415
Length = 232
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 436 VVFGGQKSTRLLDDVHDVAVELLVFEDLLHGHHHCL 329
++FGGQ S LL+ + L V + L + HH CL
Sbjct: 59 ILFGGQGSQALLEWKQRFNIALEVAKGLAYLHHECL 94
>07_03_1323 +
25813770-25814006,25814147-25814287,25814465-25814536,
25815022-25815135,25815431-25815484,25815644-25815745,
25815830-25815907,25816113-25816182,25816577-25816647,
25816764-25816856,25817306-25817374
Length = 366
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 110 DEIKKAVHGICKHMPKS-VSAECDQFVEKYADLV 208
DE+++AV G+ KH P + VS C ++K D V
Sbjct: 125 DEMREAVRGVAKHFPTAIVSGRC---IDKVFDFV 155
>06_03_1049 +
27173732-27173902,27175235-27175291,27176311-27176385,
27176481-27176621,27177144-27177542
Length = 280
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 400 DDVHDVAVELLVFEDLLHGHHH 335
DD H V + ED LH HHH
Sbjct: 201 DDDHQVTTPNSILEDPLHHHHH 222
>02_01_0521 +
3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +2
Query: 62 FVLKEIDDQIKDKHNDDEIKKAVHGICKHMPKSVSAECDQF 184
+ LKE D H DD + + V +MP EC F
Sbjct: 701 YTLKEFSTPHADHHMDDLVHRLVGRTRAYMPTDAQRECGMF 741
>01_01_0660 + 5029070-5029177,5029303-5029398,5029494-5029556,
5029836-5029913,5030446-5030614,5030797-5031180,
5031959-5032042,5032143-5032288,5032810-5033070,
5033147-5033328,5033421-5033586,5033650-5033703,
5034702-5034965,5035088-5035303,5035388-5035540,
5035630-5035827
Length = 873
Score = 28.3 bits (60), Expect = 4.6
Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 5/161 (3%)
Frame = +2
Query: 5 VNGRRVSHKSQSNVCVLCEFVLKEIDDQIKDK----HNDDEIKKAVHGICKHMPKSVSAE 172
V+ R+S+KS S C + L+ +DD ++ + H + + I + S+ A+
Sbjct: 690 VDIERLSNKSTSGNCGPLQ-PLQSVDDNVRSRGLSEHRNGHNDELDSYITSFVQMSL-AQ 747
Query: 173 CDQFVEKYADLVISLLAQELDPSEVCEELKLCK-PESXXXXXXXXXXXXCAVCETVVMAV 349
Q V++ + L+ + + E C PE C ++A+
Sbjct: 748 AKQMVDEAMKEISENGKSSLEETGISNEATDCTGPEPESAANSELPRNLIFNCIATLLAI 807
Query: 350 KKVLKNEKLDRNIVHIIEKSCGLLPAKYNAQCHAMLEIYGE 472
K + NI ++E++C +L C L IY E
Sbjct: 808 KHFSEGRHPPPNIAGVLERACLML----RPSCAENLPIYNE 844
>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 194 YADLVISLLAQELDPSEVCEELKLCK 271
Y L++S LAQE+ ++VCE K+ +
Sbjct: 1141 YVALMLSRLAQEIPVTDVCEAFKVAR 1166
>06_01_1022 + 7992901-7994676
Length = 591
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 80 DDQIKDKHNDDEIKKAVH-GICKHMPKSVSAECDQFVEKYADLVISLLAQ 226
D+Q++ + E+ KAV G+ KHM KS C F L++ L+A+
Sbjct: 316 DEQLQQEMLS-ELPKAVRSGVMKHMFKSAIESCYLFQGVSDSLIVQLVAE 364
>03_05_0148 - 21275375-21275540,21275621-21275733,21276394-21276480
Length = 121
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +2
Query: 329 ETVVMAVKKVLKNEKLDRNIVHIIEKSCGLLPAKYNAQCHAMLEIYGESIIHLIEXFGAK 508
+ ++ V+KV + E DRN ++ + SCG+ + + ++G ++ L F A
Sbjct: 45 KAIIEDVEKVKRLENEDRNALNRLLTSCGMPRGAFRDKL-----VFGCHVVELFAAFSAV 99
Query: 509 GV 514
G+
Sbjct: 100 GI 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,308,881
Number of Sequences: 37544
Number of extensions: 236112
Number of successful extensions: 813
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -