Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28g22
         (298 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    33   0.009
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    27   0.78 
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    23   9.6  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    23   9.6  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    23   9.6  

>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 33.1 bits (72), Expect = 0.009
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +1

Query: 169 DDLSEEDKRLXEELNMLVDKLLGXEVDLYFPALXMLSNLIRTS 297
           +DLSEED +L  +L +LV  +     +L   +L  L  +IRTS
Sbjct: 44  EDLSEEDLQLKNDLELLVQAVQDATPELVGSSLTQLKEIIRTS 86


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 0.78
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 178 KDHHLEPLRAQLFPSLALQFY 116
           +DH L+P R+ LF SL L  Y
Sbjct: 222 QDHELKPKRSGLFSSLCLPIY 242


>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -1

Query: 262 LENINRLXXPKAYRLAYSIPPVGVCLPRKDHH 167
           + ++N+   P +  L ++  P   CLP  D H
Sbjct: 137 VSHMNQDANPNSTVLTFTAVPYDSCLPAPDRH 168


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 229 AYRLAYSIPPVGVCLPRKDHHL 164
           A+  A+S PPV +CL     HL
Sbjct: 117 AFPTAFSDPPVKICLLAYSVHL 138


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 217 LVDKLLGXEVDLYFP 261
           L +KL   EVD+YFP
Sbjct: 23  LANKLFRGEVDVYFP 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 740,067
Number of Sequences: 5004
Number of extensions: 8315
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)