Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28g22
         (298 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.26 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   2.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    20   5.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   5.6  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.6 bits (51), Expect = 0.26
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 187 DKRLXEEL-NMLVDKLLGXEVDLYFPALXMLSNLIRT 294
           D RL   + N+    + G  VD+YF     LSN+ RT
Sbjct: 676 DARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRT 712


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 2   VTCXICXSVXXXXIHTVGKVI 64
           +T  IC S      HTVG +I
Sbjct: 140 ITAAICTSGIVGRTHTVGYII 160


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = -1

Query: 226 YRLAYSIPPVGVCLPRKDHHLEP----LRAQLFPSLALQ 122
           Y + ++ PP+G    RK   +EP    L A + P+   Q
Sbjct: 63  YGIPFAKPPIGPLRFRKPLPIEPWHGVLNATVLPNSCYQ 101


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = -1

Query: 226 YRLAYSIPPVGVCLPRKDHHLEP----LRAQLFPSLALQ 122
           Y + ++ PP+G    RK   +EP    L A + P+   Q
Sbjct: 63  YGIPFAKPPIGPLRFRKPLPIEPWHGVLNATVLPNSCYQ 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,356
Number of Sequences: 438
Number of extensions: 445
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6119169
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)