Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28g21
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    28   0.59 
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    28   0.59 
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    25   3.1  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   4.1  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   4.1  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    24   7.2  
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    24   7.2  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    24   7.2  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    24   9.5  
SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3...    24   9.5  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -2

Query: 339  TERRQFLHVGEWCTTDLYLYVKTSAPSRFHPFFDNFLPV 223
            T R  FLH+  W   DLY    +   SR   FF NFL +
Sbjct: 1429 TFRPLFLHLHSWALEDLYETDPSGIVSR-QTFFYNFLTI 1466


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -3

Query: 317 TSGSGAPPTCTCM*RPVLLPAFTHSSITFFLSATFRDICSPVVPPTSTHLKPAS 156
           T+ + APPT        ++P  TH + T  +  T     + VVPPT TH    S
Sbjct: 104 TTTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPT-THANTTS 156


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +2

Query: 230 RKLSKNG*KREGALVFTYRYKSVVHHSPTCRNWRRSVKKWRWFDSNA 370
           R ++KNG K +G  +  + Y   + H+PTC+  +++  +  + DS A
Sbjct: 228 RDVAKNG-KSQGLGLDRFDY--CIFHAPTCKQVQKAYARLLYTDSAA 271


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = +2

Query: 272 VFTYRYKS-----VVHHSPTCRNWRRSVKKWRWF 358
           V  YR+K      +V H+ T  NW R +KKW  F
Sbjct: 597 VLFYRHKCFPVLVIVPHA-TVANWERELKKWAPF 629


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 287 YKSVVHHSPTCRNWRRSVKK 346
           +KS+V     C++WR  +KK
Sbjct: 153 FKSIVQCMQVCKHWRDCIKK 172


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 159 SWLQMCTRWWYDRRAYVSKRSGQEESY 239
           SW+    +W  D + Y  +RS  E+ Y
Sbjct: 21  SWINNGAKWLEDIQLYYKERSSIEKEY 47


>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 376 SGSVRIEPTPFFDRTPPIPA 317
           S ++  E   FF ++PP+PA
Sbjct: 229 SNNIAAEDLDFFKKSPPVPA 248


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 343 FDRTPPIPARRGVVHHRLVP 284
           +D+TP I AR+   H R++P
Sbjct: 104 YDQTPDISARKRRKHFRMLP 123


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -2

Query: 138 SRYSRIVDCEIIVQRRE 88
           S+Y +++DC+II Q ++
Sbjct: 387 SKYGKVIDCKIIHQSKK 403


>SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 158

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 255 SGKEHWSSHTGTSRWCTTPRRAGIGGVLS 341
           SG +H+     +  WC+T     + G+LS
Sbjct: 111 SGPKHYEYSLKSKTWCSTRDEGTLLGILS 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,786,907
Number of Sequences: 5004
Number of extensions: 38599
Number of successful extensions: 119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)