Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28g18
         (512 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   5.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 123 QCIRNEGDLPIN 158
           QCI   GDLP+N
Sbjct: 604 QCIVPTGDLPLN 615


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +3

Query: 351 LTNTYCPLLAGEVATYTLRMFIEPFFPQGTAVTVEFRVVDERNVPV 488
           +   Y P L   VA+ T      PF P GT +    R VDE N  +
Sbjct: 267 IPEAYFPKLDSLVASRTW-----PFRPSGTVLKDINRQVDELNFDI 307


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 485 GYIPFIHDPEFDCNRSTLR 429
           G +  +HDPE+    + LR
Sbjct: 168 GVLNNLHDPEYSARENELR 186


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 485 GYIPFIHDPEFDCNRSTLR 429
           G +  +HDPE+    + LR
Sbjct: 168 GVLNNLHDPEYSARENELR 186


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 485 GYIPFIHDPEFDCNRSTLR 429
           G +  +HDPE+    + LR
Sbjct: 168 GVLNNLHDPEYSARENELR 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,954
Number of Sequences: 438
Number of extensions: 3255
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)