Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28g17
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    24   7.6  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   10.0 
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    24   10.0 
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    24   10.0 
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    24   10.0 
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    24   10.0 
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    24   10.0 

>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 214 INGGRNFVCVFINRTRHPPGNLSGGRGFSRFLYSQRTGNQL 336
           +  G  FV + +  + +PPG  +G     RF Y+Q+ G+ L
Sbjct: 272 LRSGMGFVPLRLFNS-YPPGACAGEGENPRFFYNQKEGDFL 311


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 201 HLCVRRCHLVPLNLPFFLYS 142
           HL +   H +P+ + FFLYS
Sbjct: 395 HLVLDAVHKLPMQVYFFLYS 414


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 252 PDSTPSWKPKWWTRFFPFPLFSTYRQSALKI 344
           PD+T + KP+++    P+P+   Y Q  L +
Sbjct: 500 PDATDAAKPQYYIPKDPYPVPHYYPQQPLPL 530


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 282 WWTRFFPFPLFSTYRQSALKICFILFFLLTWGILY 386
           WW   FP    S       K+  I+FF +  G +Y
Sbjct: 310 WWAMTFPLGTMSISNTQLSKVTNIIFFRVI-GAIY 343


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 282 WWTRFFPFPLFSTYRQSALKICFILFFLLTWGILY 386
           WW   FP    S       K+  I+FF +  G +Y
Sbjct: 310 WWAMTFPLGTMSISNTQLSKVTNIIFFRVI-GAIY 343


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 282 WWTRFFPFPLFSTYRQSALKICFILFFLLTWGILY 386
           WW   FP    S       K+  I+FF +  G +Y
Sbjct: 310 WWAMTFPLGTMSISNTQLSKVTNIIFFRVI-GAIY 343


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 282 WWTRFFPFPLFSTYRQSALKICFILFFLLTWGILY 386
           WW   FP    S       K+  I+FF +  G +Y
Sbjct: 310 WWAMTFPLGTMSISNTQLSKVTNIIFFRVI-GAIY 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,462,403
Number of Sequences: 5004
Number of extensions: 25531
Number of successful extensions: 74
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)