Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28g13
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.2  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    24   1.5  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   4.7  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   4.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   6.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 503 HLDFIKESNLERCVERISY 559
           H++ IK  N + C +RI+Y
Sbjct: 210 HMEVIKIKNFDNCDQRINY 228


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 118 NVRQMFNYNRNSDWLISSVNGIKLITIP 201
           N    +NYN N   L  ++N I+ I IP
Sbjct: 93  NNNYKYNYNNNCKKLYYNINYIEQIPIP 120


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 495 FIYIWILSRNPILNDVSKELATKPLSQLGIDVTKIKKDD 611
           F+Y    +R  +  DV K    +  + LG  +TKI K D
Sbjct: 132 FVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKAD 170


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 495 FIYIWILSRNPILNDVSKELATKPLSQLGIDVTKIKKDD 611
           F+Y    +R  +  DV K    +  + LG  +TKI K D
Sbjct: 132 FVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKAD 170


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/30 (26%), Positives = 12/30 (40%)
 Frame = +2

Query: 494 FYLHLDFIKESNLERCVERISYEATKSTWH 583
           +Y+H   +   N ER   R+        WH
Sbjct: 235 YYMHQQIMARYNCERLCNRLGRVKRFINWH 264


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 279 LTGSGICRWAWSEALGPSNYSAAVHRWNSD 190
           L G G+C+W   E +   +Y A +   N++
Sbjct: 277 LYGHGVCKWPGCEVI-CEDYQAFLKHLNTE 305


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 468 QYSPLTDKHFIYIWILSRNPILND 539
           +++PLTD   I+ WI    P+L +
Sbjct: 529 EWNPLTDTVPIHTWIHPWLPLLRN 552


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,580
Number of Sequences: 438
Number of extensions: 4178
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)