Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28g11
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.24 
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    26   2.3  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   3.0  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   5.2  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   5.2  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   5.2  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    24   6.9  
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19...    24   9.1  

>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 29.1 bits (62), Expect = 0.24
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 17  INVNRPSEIAADPVDVEDIAEEPLPEVVILPTPVFPE 127
           I+ N P+  A+ P+  E + EEPLP    LP    PE
Sbjct: 80  ISKNEPTSEASKPLLNELVPEEPLPREPPLPNEPVPE 116


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 23  VNRPSEIAADPVDVEDIAEEPLPEVVILPTPV 118
           ++ P++ A+  V  E   E+P+P  V+ P PV
Sbjct: 200 LSSPTQGASSNVTPESPPEKPIPSFVLSPPPV 231


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 202 GTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQRLFGNVLNING 53
           GT  Y  + FG+ + G +      DF     G +N + ++  GNV  ++G
Sbjct: 762 GTMPYNNNKFGQPQQGYMSQSGFNDFPPIFGGHSNVYNRQQPGNVSGMSG 811


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -2

Query: 146 RVQERRFQEIREWGE*QLRAKALRQCPQHQRDQRQSRK 33
           R QER  ++IRE  + + + K L+   + +R +R++ +
Sbjct: 582 RKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAER 619


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 325 LHLDHHFCIFIYNYTVLL 272
           LH  HHF I  Y+Y++ L
Sbjct: 60  LHFFHHFTIACYHYSLCL 77


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +2

Query: 35   SEIAADPVDVEDIAEE 82
            + +AAD +D+EDI+EE
Sbjct: 1084 ASLAADNMDIEDISEE 1099


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 343 AHDTIFLHLDHHFCIFIYNY 284
           A+  IFL+LD  F +F+ NY
Sbjct: 325 AYGLIFLYLDGLFPVFVDNY 344


>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
           S19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 329 IFTFRSSFLYFYLQLYCTIARISVSW 252
           IF   +SFL F+L  + ++AR    W
Sbjct: 3   IFAQLTSFLTFHLMFWTSVARARSVW 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,314,554
Number of Sequences: 5004
Number of extensions: 24638
Number of successful extensions: 78
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)