Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28g10
(556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 33 0.021
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 26 3.2
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 7.5
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 25 7.5
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 7.5
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 25 7.5
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 7.5
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 25 9.9
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 25 9.9
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 33.5 bits (73), Expect = 0.021
Identities = 26/101 (25%), Positives = 48/101 (47%)
Frame = +2
Query: 140 KPIDAFRDYSVDDTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLKFNHFKATVKDALIK 319
K + F +YSV+D D +ER R+ + + V+ + R++W +F K+ ++ +
Sbjct: 217 KMVANFEEYSVEDVDKRRERNRK----LSEPLLVNGRYRVRDRWAQFR--KSEIEKP-YR 269
Query: 320 LNELVDESDPDTDLPNIVHAFQTAERIREDHPDEDWFHLTG 442
DE LP+ +H+ + E + + ED FH G
Sbjct: 270 FTFFTDE------LPSTIHSHEMWELVHDGQSFEDLFHSGG 304
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 176 DTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLK 277
D D + +R + L+HSN ++ +KQ+ E+ K
Sbjct: 1035 DVDQMNSLLREAFVLLHSNNIMERLKQEFEERYK 1068
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.0 bits (52), Expect = 7.5
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 56 KMAAEVEKKPVSMIDPSQLLRPEPTFNDKPIDAFRDYSVDDTD 184
+ AA K P+ +DPS EP+ D D VDD D
Sbjct: 1441 RRAAATVKTPI-YVDPSFDSMDEPSMQDDSFIVDNDEDVDDYD 1482
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 7.5
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +2
Query: 194 ERVRRTYYLMHSNVTVDLVKQKREKWLKFNHFKATVKDALIKLNELVDESDPDTDLPNI 370
ER R Y L N+ D + R+ N +KA VK + ++ +E + D D+P I
Sbjct: 431 ERQERDYELFLQNLEED--PELRQG---VNLYKAPVKAIAVADTDMDEEDEVDEDIPQI 484
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 44 LTNNKMAAEVEKKPVSMIDPSQLLRPEPTFNDKP 145
+ N + AE+E K + ID +L RP+ +KP
Sbjct: 488 IENVPIIAEIENKSIDSIDTRKLNRPQ-DIEEKP 520
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.0 bits (52), Expect = 7.5
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 395 RIRED-HPDEDWFHLTGLIHDLGKVMAFYDEPQWCVVGDTFPVGCK 529
R+ +D D D F L +GK +++Y C+V FP+G K
Sbjct: 514 RLPDDMQQDLDCFEKFYLSKQVGKKISWYASLGHCIVKARFPLGNK 559
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 365 NIVHAFQTAERIREDHPDEDWFHLTG 442
NI+ + +TAE IR PD+ FH+ G
Sbjct: 179 NILRSDKTAEEIRSVPPDQ-LFHIAG 203
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 24.6 bits (51), Expect = 9.9
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Frame = +2
Query: 146 IDAFRDYSVDDTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLKFNHFK--ATVKDALIK 319
+D F S DP R ++ +HSN+ V + + W + VK +
Sbjct: 20 LDVFDSPSAGWNDPWSPHSSRYHWQLHSNLGESAVFDENDFWCVCQKTRKHLHVKVRRDR 79
Query: 320 LNELVDESDPDTDLPNIVHAFQTAERIREDH 412
L++E + + + + + + E + E H
Sbjct: 80 GKPLIEEPEENYGIKDRIPVYYEEEELPEPH 110
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 24.6 bits (51), Expect = 9.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +2
Query: 257 KREKWLKFNHFKATVKDALIKLNELVDES---DPDTDLPNIVHAFQTAER 397
KR++ K + K +K++E+ + S DPD +VH T R
Sbjct: 225 KRKQAKKLLEKQENQKSVEVKISEITESSQQIDPDKSFAEVVHILVTTIR 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,595
Number of Sequences: 5004
Number of extensions: 42708
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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