Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28g08
         (322 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           60   9e-12
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           60   9e-12
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   0.91 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   1.6  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   4.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   4.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   8.4  

>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 59.7 bits (138), Expect = 9e-12
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
 Frame = +3

Query: 36  MGTWFSYMWWGG-DPDVVNPVSGLTRREIHAVQKSWAPVNANSFATGSELLRRLFNTYPD 212
           MGT+  ++     D + ++  +GLT R+   VQ +WA V  +  A+G  ++   F  YP+
Sbjct: 1   MGTFLRFLGISSSDDNRIDQATGLTERQKKLVQNTWAVVRKDEVASGIAVMTAFFKKYPE 60

Query: 213 TKEYFKMVRKLPEEEYSQNPQFKAHVINLMTSLN 314
            + YF      P  E   N +F+AH   ++T+LN
Sbjct: 61  YQRYFTAFMDTPLNELPANKRFQAHCAGVITALN 94


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 59.7 bits (138), Expect = 9e-12
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
 Frame = +3

Query: 36  MGTWFSYMWWGG-DPDVVNPVSGLTRREIHAVQKSWAPVNANSFATGSELLRRLFNTYPD 212
           MGT+  ++     D + ++  +GLT R+   VQ +WA V  +  A+G  ++   F  YP+
Sbjct: 1   MGTFLRFLGISSSDDNRIDQATGLTERQKKLVQNTWAVVRKDEVASGIAVMTAFFKKYPE 60

Query: 213 TKEYFKMVRKLPEEEYSQNPQFKAHVINLMTSLN 314
            + YF      P  E   N +F+AH   ++T+LN
Sbjct: 61  YQRYFTAFMDTPLNELPANKRFQAHCAGVITALN 94


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 0.91
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 179 FTAGCKRVGVDGGP*FLNCVYLSPREPGDRVHHVRIPT 66
           +TA C +V   G    L  V++  R  G  + H  IPT
Sbjct: 218 YTADCTQVYSTGNFTCLEVVFVLKRRLGYYLFHTYIPT 255


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 156 NSFATGSELLRRLFNTYPDTKEYF 227
           N   T  E    L+ + PD+++YF
Sbjct: 78  NKLPTTPEYNNHLYGSTPDSRDYF 101


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 122 VYLSPREPGDRVHHVRIPT 66
           +YLSPR P   V+   I T
Sbjct: 25  IYLSPRTPIKNVYKNNIET 43


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 30  QIMGTWFSYMWWGGDPDV 83
           Q+ G W S +    DPD+
Sbjct: 402 QVTGIWHSNLTTPDDPDI 419



 Score = 19.8 bits (39), Expect = 8.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 104 EPGDRVHHVRIP 69
           EP  RVH  RIP
Sbjct: 54  EPCQRVHSSRIP 65


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 91  RSPGSRGERYTQFKNHGP 144
           R PG+    +T+ K H P
Sbjct: 140 REPGTPRINFTKLKRHHP 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,195
Number of Sequences: 438
Number of extensions: 1870
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)