Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28g04
(535 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 36 0.004
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom... 28 0.76
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.8
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 2.3
SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces... 27 2.3
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha... 26 3.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 4.1
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 25 5.4
SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 7.1
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 25 7.1
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 25 9.4
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 25 9.4
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 9.4
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 35.9 bits (79), Expect = 0.004
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +2
Query: 332 LLEDDLNGIYEDIRSELERNTNQSELNTIATYYFDGQGKALRPMVAILMARAVN 493
L++++L I IR L N+N L + YY QGK +RP + +LM++A +
Sbjct: 36 LIKNELEQISPGIRQML--NSNSEFLEECSKYYTIAQGKQMRPSLVLLMSKATS 87
>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 28.3 bits (60), Expect = 0.76
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +2
Query: 317 IDPYRLLEDDLNGIYEDIRSELERNTNQSELNTIAT 424
IDP+ L EDDLN + ED S+ ++ S+L+ AT
Sbjct: 53 IDPHLLEEDDLNPV-EDYDSKNQKVVEASKLDLDAT 87
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 155 SPLRTFGKTCQTVTTCGPTCGAGSLPVP 238
+PL T +C T T+ PT G+ SL P
Sbjct: 163 NPLPTTSTSCTTSTSIPPTGGSSSLSTP 190
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 155 SPLRTFGKTCQTVTTCGPTCGAGSLPVP 238
SPL + +C T T+ PT G+ SL P
Sbjct: 106 SPLPSTSTSCTTSTSIPPTGGSSSLSTP 133
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 2.3
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 131 VKLKPPGPSPLRTFGKTCQTVTTCGPTCGAGSLPVPGGLVRRFASN-LQSTSTGSLP 298
+K++P + + G+T QT+ GP+ L + +VR+ SN L G LP
Sbjct: 804 LKIQPLRTTSMEPGGETSQTLRVHGPSGSQVKLRLRISVVRQGGSNTLDQVDFGKLP 860
>SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 113
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2
Query: 263 SNLQSTSTGSLPDYGTQIID 322
SNL ST GSL DY QII+
Sbjct: 26 SNLGSTKLGSLIDYMAQIIE 45
>SPBC651.03c |gyp10||GTPase activating protein
Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 373
Score = 26.2 bits (55), Expect = 3.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 217 STCRTACRDRLTCLSK-CPQRRWSRRFEFHKYSLFSKFMSKLTH*LILNTSTEPTR 53
S C +CR R+ CLS+ Q ++ + + H S S F KL L+ ++ T+
Sbjct: 47 SLCGLSCRHRMECLSRSTSQSSYADQNQVHLDSERSFFQYKLNPFLLRKHRSQLTK 102
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 128 FVKLKPPGPSPLRTFG 175
F K++PP PSPL+ G
Sbjct: 1628 FAKMQPPAPSPLQPSG 1643
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 245 LVRRFASNLQSTSTGSLPDYGTQIIDP 325
LV+RF+S S + GS+ + +IDP
Sbjct: 967 LVKRFSSAGNSVNQGSIKKFMNSLIDP 993
>SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 119
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 399 WFVFLSSSDLISSYIPLRSSSNKRYGSMICVP*SGR 292
WF+++S + Y P RSSS G+ +P G+
Sbjct: 21 WFLYISLELFNNMYSPFRSSSVLLSGAQSDIPKVGK 56
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 7.1
Identities = 22/93 (23%), Positives = 33/93 (35%)
Frame = +2
Query: 41 ACLSSSRLCARVQDKLMCQFGHKLRKQTVFVKLKPPGPSPLRTFGKTCQTVTTCGPTCGA 220
A SSS + + Q L QT + PP +P R T P A
Sbjct: 77 AVASSSNVSLQSQQPLSKPVVSSKPNQTT--AMPPPSNNPSRHVSSTSNKPAAVSPNPAA 134
Query: 221 GSLPVPGGLVRRFASNLQSTSTGSLPDYGTQII 319
+P G V AS ++ ST + + ++
Sbjct: 135 HHAELPSGSVPPSASVSRANSTATTTPHKAGVV 167
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 151 SRRFEFHKYSLFSKFMSKLTH*LILNTSTEPTR 53
S+R E+ KY++ +L H L L T+P R
Sbjct: 39 SKREEYQKYNIICGKFRQLAHRLSLLDPTDPFR 71
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 32 VAMACLSSSRLCARVQDKLMC 94
+A+ CL + L R+ DKLMC
Sbjct: 492 LAIYCLKDAYLPQRLMDKLMC 512
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 296 PDYGTQIIDPYRLLEDDLNGIYEDIRSELERNTNQSELNTIATYYFDGQGKALRPMVAIL 475
P Y ++D ++ + + +R E+N ++ I ++ FDG + L ++ +L
Sbjct: 739 PHYYVDVLDSIKIPDTVFKKLIGSVRLVKEKNPAIAKRKRIDSHIFDGDVQRLTRILELL 798
Query: 476 MAR-AVNY 496
+ A +Y
Sbjct: 799 ETKNAASY 806
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,092,639
Number of Sequences: 5004
Number of extensions: 40567
Number of successful extensions: 120
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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