Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28g04
(535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1127 - 27807784-27807963,27808362-27808460,27809076-278091... 35 0.036
08_01_0622 + 5429317-5429403,5429673-5429765,5429950-5430030,543... 33 0.14
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 32 0.33
02_02_0493 + 10921284-10922558 30 1.0
12_02_0719 + 22500217-22500395,22500506-22500551,22500671-225007... 29 3.1
06_01_1190 + 10231166-10231222,10231318-10234122 29 3.1
10_08_0031 + 14281681-14282023,14282105-14282484,14282581-142826... 28 4.1
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 27 9.5
03_05_0961 - 29224548-29225125,29225286-29225308,29225736-292258... 27 9.5
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 27 9.5
01_01_0490 + 3620523-3623403,3623524-3623996 27 9.5
>06_03_1127 -
27807784-27807963,27808362-27808460,27809076-27809165,
27809272-27809404,27809539-27809624,27810028-27810099,
27810329-27810415,27810485-27810616,27810718-27810789,
27810957-27811037,27811871-27811963,27812298-27812465
Length = 430
Score = 35.1 bits (77), Expect = 0.036
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +2
Query: 320 DPYRLLEDDLNGIYEDIRSELERNTNQSELNTIATYYFD--GQGKALRPMVAILMARAVN 493
DP+ L+ D+L+ + +RS + +L + A Y+F +GK RP V +LMA A+
Sbjct: 91 DPFELVADELSLLANRLRSMVAAEV--PKLASAAEYFFKVGAEGKRFRPTVLLLMASALK 148
Query: 494 Y 496
+
Sbjct: 149 F 149
>08_01_0622 +
5429317-5429403,5429673-5429765,5429950-5430030,
5430166-5430237,5430379-5430495,5430585-5430671,
5431126-5431200,5431442-5431566,5432489-5432621,
5432719-5432808,5433210-5433389
Length = 379
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +2
Query: 311 QIIDPYRLLEDDLNGIYEDIRSELERNTNQSELNTIATYYF--DGQGKALRPMVAILMAR 484
+++DP L++D+++ I +RS + EL A Y+F +GK P V +LMA
Sbjct: 61 ELLDPLALIKDEVSEISNRLRSMVVAEV--PELTLAAGYFFRAGAEGKRTCPTVLLLMAS 118
Query: 485 AVN 493
+++
Sbjct: 119 SIS 121
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 31.9 bits (69), Expect = 0.33
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 146 PGPSPLRTFGKTCQTVTTCGPTCGAGSLPVPGGLVRRFASNLQSTSTGSLPD 301
P P P + + +C P CG P+PG +VR S L+ +TG D
Sbjct: 139 PQPKPKPRISVLKEFLCSCNPICGNEGGPLPGVIVRFSYSELEQ-ATGKFSD 189
>02_02_0493 + 10921284-10922558
Length = 424
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 153 GPGGLSFTNTVCFRSLCPN*HIN 85
G G + +T+C RS+C N HIN
Sbjct: 329 GSTGWTLVDTICLRSMCANLHIN 351
>12_02_0719 +
22500217-22500395,22500506-22500551,22500671-22500745,
22500846-22500932,22501077-22501148,22501267-22501338,
22501448-22501519,22501644-22502510
Length = 489
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/60 (25%), Positives = 24/60 (40%)
Frame = +2
Query: 236 PGGLVRRFASNLQSTSTGSLPDYGTQIIDPYRLLEDDLNGIYEDIRSELERNTNQSELNT 415
P G+V S + ++D + EDD N D +E+ N N+ E N+
Sbjct: 150 PDGMVNEAVETYNHNSERDCAEITAHVMDTENVTEDDDNSGKNDAENEIIVNENEGEENS 209
>06_01_1190 + 10231166-10231222,10231318-10234122
Length = 953
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 338 EDDLNGIYEDIRSELERNTNQSEL 409
EDD++ EDIR++ RN +++EL
Sbjct: 61 EDDMDSYAEDIRNQSARNVDEAEL 84
>10_08_0031 +
14281681-14282023,14282105-14282484,14282581-14282646,
14284078-14284191,14284302-14284418,14284526-14284652,
14284779-14285065,14285200-14285390,14285504-14285589,
14285718-14285794,14285902-14286090
Length = 658
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 452 VPCLVRRSSMWLWCSILIGLCFFL 381
V +V +S W W SI++G CF +
Sbjct: 232 VRSVVTQSHQWRWQSIVVGCCFLI 255
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 124 CICETQTSWTISVADIWKDMSDGHDMRSDMWSRQFTGPRRLSAP 255
C Q S TISV + + HD + MW R PR + P
Sbjct: 958 CYVHPQGSLTISVRKLAVKLPGEHDGKIWMWHRCLRCPRVIGLP 1001
>03_05_0961 -
29224548-29225125,29225286-29225308,29225736-29225864,
29226533-29228217
Length = 804
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 284 TGSLPDYGTQIIDPYRLLEDDLNGIYEDIRSELERNTNQSELNTIATYYFDGQ 442
TG+LPD G + ++++ N Y + + +++L I+ YFDG+
Sbjct: 223 TGALPDTGLALPSNVQVVDLSGNLFYGGVPGSFGQLFGRTKLANISGNYFDGK 275
>01_03_0303 +
14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 497 GS*QPWPLKSQPSV*VPCLVRRSSMWLWCSIL 402
G + W LKSQ + V +VRR + LW ++L
Sbjct: 101 GPHEEWALKSQTAALVAEVVRREGVALWNTLL 132
>01_01_0490 + 3620523-3623403,3623524-3623996
Length = 1117
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Frame = +2
Query: 20 CVAVVAMACLSSSRLCARVQDKLMCQFGHKLR-KQTVFVKLKPPGPSPLRTFGKTC 184
CV V AC+ L A Q + + LR T P SP R G C
Sbjct: 19 CVVAVVAACMVGGALAADAQGAALLAWKRTLRGGDTALPDWNPADASPCRWTGVRC 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,547,164
Number of Sequences: 37544
Number of extensions: 304196
Number of successful extensions: 926
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -