Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28g04
(535 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014297-4727|AAF57135.2| 436|Drosophila melanogaster CG31005-P... 97 2e-20
AY058325-1|AAL13554.1| 662|Drosophila melanogaster GH09510p pro... 31 0.75
AE014296-1453|AAF50418.2| 662|Drosophila melanogaster CG32354-P... 31 0.75
BT011415-1|AAR96207.1| 994|Drosophila melanogaster AT14917p pro... 30 2.3
AY058534-1|AAL13763.1| 497|Drosophila melanogaster LD23951p pro... 30 2.3
AE014297-2712|AAF55702.2| 497|Drosophila melanogaster CG4662-PA... 30 2.3
AE014297-2711|AAN13811.1| 479|Drosophila melanogaster CG4662-PB... 30 2.3
AE014297-1735|AAF54973.2| 994|Drosophila melanogaster CG9591-PA... 30 2.3
AY069738-1|AAL39883.1| 297|Drosophila melanogaster LP05733p pro... 29 3.0
AM294581-1|CAL26564.1| 297|Drosophila melanogaster CG7953 protein. 29 3.0
AM294580-1|CAL26563.1| 297|Drosophila melanogaster CG7953 protein. 29 3.0
AM294579-1|CAL26562.1| 297|Drosophila melanogaster CG7953 protein. 29 3.0
AM294578-1|CAL26561.1| 297|Drosophila melanogaster CG7953 protein. 29 3.0
AM294577-1|CAL26560.1| 297|Drosophila melanogaster CG7953 protein. 29 3.0
AM294576-1|CAL26559.1| 297|Drosophila melanogaster CG7953 protein. 29 3.0
AM294575-1|CAL26558.1| 297|Drosophila melanogaster CG7953 protein. 29 3.0
AM294574-1|CAL26557.1| 297|Drosophila melanogaster CG7953 protein. 29 3.0
AM294573-1|CAL26556.1| 297|Drosophila melanogaster CG7953 protein. 29 3.0
AM294572-1|CAL26555.1| 297|Drosophila melanogaster CG7953 protein. 29 3.0
AM294571-1|CAL26554.1| 297|Drosophila melanogaster CG7953 protein. 29 3.0
AE014134-2420|AAF53347.1| 297|Drosophila melanogaster CG7953-PA... 29 3.0
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me... 28 7.0
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro... 28 7.0
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA... 28 7.0
>AE014297-4727|AAF57135.2| 436|Drosophila melanogaster CG31005-PA
protein.
Length = 436
Score = 96.7 bits (230), Expect = 2e-20
Identities = 43/73 (58%), Positives = 57/73 (78%)
Frame = +2
Query: 317 IDPYRLLEDDLNGIYEDIRSELERNTNQSELNTIATYYFDGQGKALRPMVAILMARAVNY 496
IDPY +L+DDL Y+D+R L+ T+Q EL+TIA+YYFDGQGKALRPMV +LMA+A+NY
Sbjct: 111 IDPYIILDDDLKYFYDDVRYLLKSGTSQPELDTIASYYFDGQGKALRPMVTMLMAKAINY 170
Query: 497 HVYGENXALLPSQ 535
H+ E+ L+ Q
Sbjct: 171 HLNNESHQLVHKQ 183
>AY058325-1|AAL13554.1| 662|Drosophila melanogaster GH09510p
protein.
Length = 662
Score = 31.5 bits (68), Expect = 0.75
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +2
Query: 77 QDKLMCQFGHKLRKQTVFVKLKPPGPSPLRTFGKTCQTVTTCGPTCGAGSLPVPGGLVRR 256
+D +C + T +KLK G ++T K CQ+ C +C + P G R
Sbjct: 285 KDGPVCSSDGNVYNSTCEMKLKTCGQGVVKTSRKHCQSTRMCRESCWRVARPTCGSDGRL 344
Query: 257 FASNLQSTST 286
+AS + S+
Sbjct: 345 YASPCKMRSS 354
>AE014296-1453|AAF50418.2| 662|Drosophila melanogaster CG32354-PA
protein.
Length = 662
Score = 31.5 bits (68), Expect = 0.75
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +2
Query: 77 QDKLMCQFGHKLRKQTVFVKLKPPGPSPLRTFGKTCQTVTTCGPTCGAGSLPVPGGLVRR 256
+D +C + T +KLK G ++T K CQ+ C +C + P G R
Sbjct: 285 KDGPVCSSDGNVYNSTCEMKLKTCGQGVVKTSRKHCQSTRMCRESCWRVARPTCGSDGRL 344
Query: 257 FASNLQSTST 286
+AS + S+
Sbjct: 345 YASPCKMRSS 354
>BT011415-1|AAR96207.1| 994|Drosophila melanogaster AT14917p
protein.
Length = 994
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 113 EVYVQIDTLTYPEHEHRAYSNLNT 42
EVY Q+D L PEHEH NL+T
Sbjct: 688 EVY-QLDELEIPEHEHLILQNLHT 710
>AY058534-1|AAL13763.1| 497|Drosophila melanogaster LD23951p
protein.
Length = 497
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 275 STSTGSLPDYGTQIIDPY--RLLEDDLNGIYEDIRSELERNTNQSELNTIATYYFDGQGK 448
S G+L D TQ +DP R++E +G +++ E E + + Y DG+G
Sbjct: 217 SILAGALKD--TQNVDPQTKRIMERIFSGAWKEKHGEQEPEEELATPTPLENYVNDGEGL 274
Query: 449 ALRPMVA 469
R MVA
Sbjct: 275 QRRHMVA 281
>AE014297-2712|AAF55702.2| 497|Drosophila melanogaster CG4662-PA,
isoform A protein.
Length = 497
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 275 STSTGSLPDYGTQIIDPY--RLLEDDLNGIYEDIRSELERNTNQSELNTIATYYFDGQGK 448
S G+L D TQ +DP R++E +G +++ E E + + Y DG+G
Sbjct: 217 SILAGALKD--TQNVDPQTKRIMERIFSGAWKEKHGEQEPEEELATPTPLENYVNDGEGL 274
Query: 449 ALRPMVA 469
R MVA
Sbjct: 275 QRRHMVA 281
>AE014297-2711|AAN13811.1| 479|Drosophila melanogaster CG4662-PB,
isoform B protein.
Length = 479
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 275 STSTGSLPDYGTQIIDPY--RLLEDDLNGIYEDIRSELERNTNQSELNTIATYYFDGQGK 448
S G+L D TQ +DP R++E +G +++ E E + + Y DG+G
Sbjct: 217 SILAGALKD--TQNVDPQTKRIMERIFSGAWKEKHGEQEPEEELATPTPLENYVNDGEGL 274
Query: 449 ALRPMVA 469
R MVA
Sbjct: 275 QRRHMVA 281
>AE014297-1735|AAF54973.2| 994|Drosophila melanogaster CG9591-PA
protein.
Length = 994
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 113 EVYVQIDTLTYPEHEHRAYSNLNT 42
EVY Q+D L PEHEH NL+T
Sbjct: 688 EVY-QLDELEIPEHEHLILQNLHT 710
>AY069738-1|AAL39883.1| 297|Drosophila melanogaster LP05733p
protein.
Length = 297
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 251 RRFASNLQSTSTGSLPDYGTQIIDPYRLLEDDLN---GIYEDI 370
RRF LQ P YG ++ P R+ E DL+ GI+E +
Sbjct: 60 RRFIRKLQKQMECGWPQYGIPVLAPLRINEFDLDYKKGIFETL 102
>AM294581-1|CAL26564.1| 297|Drosophila melanogaster CG7953 protein.
Length = 297
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 251 RRFASNLQSTSTGSLPDYGTQIIDPYRLLEDDLN---GIYEDI 370
RRF LQ P YG ++ P R+ E DL+ GI+E +
Sbjct: 60 RRFIRKLQKQMECGWPQYGIPVLAPLRINEFDLDYKKGIFETL 102
>AM294580-1|CAL26563.1| 297|Drosophila melanogaster CG7953 protein.
Length = 297
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 251 RRFASNLQSTSTGSLPDYGTQIIDPYRLLEDDLN---GIYEDI 370
RRF LQ P YG ++ P R+ E DL+ GI+E +
Sbjct: 60 RRFIRKLQKQMECGWPQYGIPVLAPLRINEFDLDYKKGIFETL 102
>AM294579-1|CAL26562.1| 297|Drosophila melanogaster CG7953 protein.
Length = 297
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 251 RRFASNLQSTSTGSLPDYGTQIIDPYRLLEDDLN---GIYEDI 370
RRF LQ P YG ++ P R+ E DL+ GI+E +
Sbjct: 60 RRFIRKLQKQMECGWPQYGIPVLAPLRINEFDLDYKKGIFETL 102
>AM294578-1|CAL26561.1| 297|Drosophila melanogaster CG7953 protein.
Length = 297
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 251 RRFASNLQSTSTGSLPDYGTQIIDPYRLLEDDLN---GIYEDI 370
RRF LQ P YG ++ P R+ E DL+ GI+E +
Sbjct: 60 RRFIRKLQKQMECGWPQYGIPVLAPLRINEFDLDYKKGIFETL 102
>AM294577-1|CAL26560.1| 297|Drosophila melanogaster CG7953 protein.
Length = 297
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 251 RRFASNLQSTSTGSLPDYGTQIIDPYRLLEDDLN---GIYEDI 370
RRF LQ P YG ++ P R+ E DL+ GI+E +
Sbjct: 60 RRFIRKLQKQMECGWPQYGIPVLAPLRINEFDLDYKKGIFETL 102
>AM294576-1|CAL26559.1| 297|Drosophila melanogaster CG7953 protein.
Length = 297
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 251 RRFASNLQSTSTGSLPDYGTQIIDPYRLLEDDLN---GIYEDI 370
RRF LQ P YG ++ P R+ E DL+ GI+E +
Sbjct: 60 RRFIRKLQKQMECGWPQYGIPVLAPLRINEFDLDYKKGIFETL 102
>AM294575-1|CAL26558.1| 297|Drosophila melanogaster CG7953 protein.
Length = 297
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 251 RRFASNLQSTSTGSLPDYGTQIIDPYRLLEDDLN---GIYEDI 370
RRF LQ P YG ++ P R+ E DL+ GI+E +
Sbjct: 60 RRFIRKLQKQMECGWPQYGIPVLAPLRINEFDLDYKKGIFETL 102
>AM294574-1|CAL26557.1| 297|Drosophila melanogaster CG7953 protein.
Length = 297
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 251 RRFASNLQSTSTGSLPDYGTQIIDPYRLLEDDLN---GIYEDI 370
RRF LQ P YG ++ P R+ E DL+ GI+E +
Sbjct: 60 RRFIRKLQKQMECGWPQYGIPVLAPLRINEFDLDYKKGIFETL 102
>AM294573-1|CAL26556.1| 297|Drosophila melanogaster CG7953 protein.
Length = 297
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 251 RRFASNLQSTSTGSLPDYGTQIIDPYRLLEDDLN---GIYEDI 370
RRF LQ P YG ++ P R+ E DL+ GI+E +
Sbjct: 60 RRFIRKLQKQMECGWPQYGIPVLAPLRINEFDLDYKKGIFETL 102
>AM294572-1|CAL26555.1| 297|Drosophila melanogaster CG7953 protein.
Length = 297
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 251 RRFASNLQSTSTGSLPDYGTQIIDPYRLLEDDLN---GIYEDI 370
RRF LQ P YG ++ P R+ E DL+ GI+E +
Sbjct: 60 RRFIRKLQKQMECGWPQYGIPVLAPLRINEFDLDYKKGIFETL 102
>AM294571-1|CAL26554.1| 297|Drosophila melanogaster CG7953 protein.
Length = 297
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 251 RRFASNLQSTSTGSLPDYGTQIIDPYRLLEDDLN---GIYEDI 370
RRF LQ P YG ++ P R+ E DL+ GI+E +
Sbjct: 60 RRFIRKLQKQMECGWPQYGIPVLAPLRINEFDLDYKKGIFETL 102
>AE014134-2420|AAF53347.1| 297|Drosophila melanogaster CG7953-PA
protein.
Length = 297
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 251 RRFASNLQSTSTGSLPDYGTQIIDPYRLLEDDLN---GIYEDI 370
RRF LQ P YG ++ P R+ E DL+ GI+E +
Sbjct: 60 RRFIRKLQKQMECGWPQYGIPVLAPLRINEFDLDYKKGIFETL 102
>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
D.melanogaster RpII215gene encoding RNA polymerase II,
largest subunit, completecds. ).
Length = 1896
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +2
Query: 269 LQSTSTGSLPDYGTQIIDPYRLLEDDLNGIYEDIRSELERNTNQSELNTIATYY 430
L++ T + + +DP R +D+ I++ + E R + + E+N + +Y
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY 1381
>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p protein.
Length = 1429
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +2
Query: 269 LQSTSTGSLPDYGTQIIDPYRLLEDDLNGIYEDIRSELERNTNQSELNTIATYY 430
L++ T + + +DP R +D+ I++ + E R + + E+N + +Y
Sbjct: 870 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY 923
>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
protein.
Length = 1887
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +2
Query: 269 LQSTSTGSLPDYGTQIIDPYRLLEDDLNGIYEDIRSELERNTNQSELNTIATYY 430
L++ T + + +DP R +D+ I++ + E R + + E+N + +Y
Sbjct: 1328 LETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY 1381
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,034,088
Number of Sequences: 53049
Number of extensions: 510835
Number of successful extensions: 1654
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2012211456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -