Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28g04
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q (ubi...    34   0.056
U41274-2|AAD50512.1|  347|Caenorhabditis elegans Intracellular l...    31   0.52 
Z81073-9|CAB03030.2|  583|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z79752-7|CAC70084.1|  583|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U40946-4|AAA81726.1|  414|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AL117195-28|CAB55014.1|  458|Caenorhabditis elegans Hypothetical...    28   3.7  
Z68270-2|CAA92567.1|  532|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AL132948-38|CAD31811.1|  378|Caenorhabditis elegans Hypothetical...    27   8.5  
AF003385-5|AAB54245.1|  494|Caenorhabditis elegans Hypothetical ...    27   8.5  

>U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 1 protein.
          Length = 393

 Score = 34.3 bits (75), Expect = 0.056
 Identities = 20/55 (36%), Positives = 31/55 (56%)
 Frame = +2

Query: 329 RLLEDDLNGIYEDIRSELERNTNQSELNTIATYYFDGQGKALRPMVAILMARAVN 493
           +L+  D +G  E++ ++L   +N   L  +  YYF   GK LRP V++LM  A N
Sbjct: 53  QLIPQDESGAVENL-ADLNVTSN---LGRMTHYYFQQGGKMLRPTVSLLMGNACN 103


>U41274-2|AAD50512.1|  347|Caenorhabditis elegans Intracellular
           lectin protein 2 protein.
          Length = 347

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +1

Query: 88  NVSIWT*TSKTNCICETQTSWTISVADIWKDMSDGHDMRS-DMWSRQFTGPRRLSAPLRL 264
           N  IW      N + +  T + I V+    D+SD HD+ S  M+ ++F    R+    R 
Sbjct: 226 NKGIWNLCMSVNNV-QLPTGYYIGVSAATGDLSDAHDVVSLKMFEQEFAHVERVGEADRR 284

Query: 265 QFTEHKHRLSAGLRHTD 315
               H    ++   HTD
Sbjct: 285 NVVPHAQFTASPRDHTD 301


>Z81073-9|CAB03030.2|  583|Caenorhabditis elegans Hypothetical
           protein F30F8.2 protein.
          Length = 583

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 202 ACRDRLTCLSKCPQRRWSRRFEFH 131
           ACRD L+ +  C    WS +F FH
Sbjct: 382 ACRDTLSLMYSCGMYDWSGQFAFH 405


>Z79752-7|CAC70084.1|  583|Caenorhabditis elegans Hypothetical
           protein F30F8.2 protein.
          Length = 583

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 202 ACRDRLTCLSKCPQRRWSRRFEFH 131
           ACRD L+ +  C    WS +F FH
Sbjct: 382 ACRDTLSLMYSCGMYDWSGQFAFH 405


>U40946-4|AAA81726.1|  414|Caenorhabditis elegans Hypothetical
           protein W05H9.1 protein.
          Length = 414

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 257 FASNLQSTSTGSLPDYGTQIIDPYRLLEDDLNGIYEDIRSELE--RNTNQSELN 412
           FAS++ S    SL D    +ID  + LE++L   +E+ R+  +  R   Q +LN
Sbjct: 13  FASSVSSVRYYSLADTFQSVIDTEKALEEELRVNFENARAARDKYREETQKKLN 66


>AL117195-28|CAB55014.1|  458|Caenorhabditis elegans Hypothetical
           protein Y57A10A.11 protein.
          Length = 458

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
 Frame = +2

Query: 143 PPGP---SPLRTFGKTCQTVTTCGPTCGAGSLPVPGGLVRRFASNLQSTSTGSLPDY 304
           PP P   +P  T  KT  T TT   T    +   P            +T+TGS+P Y
Sbjct: 119 PPPPKTEAPTTTTKKTTTTTTTTTTTTSTTTTEAPTTTKTTTTRRPSTTTTGSVPSY 175


>Z68270-2|CAA92567.1|  532|Caenorhabditis elegans Hypothetical
           protein ZC410.3 protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 359 YEDIR---SELERNTNQSELNTIATYYFDGQGKALRPMVAILMARAVNYHVY 505
           YED+    SE   N    +++ +  +Y DG+G+  +  +  L ARA +Y+ Y
Sbjct: 250 YEDVAFGASEHVHNVGCKKMDGLCPFYIDGKGEFKKSSIT-LGARADSYYEY 300


>AL132948-38|CAD31811.1|  378|Caenorhabditis elegans Hypothetical
           protein Y39B6A.12a protein.
          Length = 378

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +2

Query: 245 LVRRFASNLQSTSTGSLPDYGTQ----IIDPYRLLEDDLNGIYEDIRSELERN 391
           L+ +F +   S   G LPD+ +     ++DP    + +++ +  +++ E E+N
Sbjct: 138 LLEQFLNVDDSAPRGGLPDHDSPQHMLVVDPQSRADSEIDAVIRNLQQETEQN 190


>AF003385-5|AAB54245.1|  494|Caenorhabditis elegans Hypothetical
           protein R08F11.3 protein.
          Length = 494

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 143 PPGPSPLRTFGKTCQTV 193
           PPGP+PL  FG T  T+
Sbjct: 28  PPGPTPLPLFGNTLPTL 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,066,377
Number of Sequences: 27780
Number of extensions: 250860
Number of successful extensions: 772
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)