Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28g04
         (535 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   6.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   6.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   6.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   6.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 101  GHKLRKQTVFVKLKP 145
            GH L+ QT+F+K  P
Sbjct: 1039 GHGLQGQTIFIKQSP 1053


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 305 RNPAESRCLCSVNWRRSGAL 246
           +NP     +C++N  +SGA+
Sbjct: 30  KNPQPKNAVCALNELKSGAV 49


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 148 WTISVADIWKDMSDGHDMRSDMWSRQFTGPRRLSAP 255
           + I VADI     +  D R DM+ RQ     RL  P
Sbjct: 15  FNIFVADINSINVEDMDFRVDMFVRQSWIESRLDMP 50


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 181 MSDGHDMRSDMWS 219
           ++ GHD+ +D WS
Sbjct: 538 LNKGHDISADYWS 550


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 248 VRRFASNLQSTSTGSLPDYGTQIIDPYRLLEDDL 349
           VR  A N+Q TS G +       +DP  +  +DL
Sbjct: 447 VRMSALNVQPTSKGRITLNSKDPLDPPVIWSNDL 480


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,893
Number of Sequences: 438
Number of extensions: 2757
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)