Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28g03
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    26   4.4  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   5.8  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   5.8  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    25   7.6  

>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 407 PGXNLRTLSTFGHHRNRLCMVKLTGY 330
           P  +L  +  FG   N +CM +L GY
Sbjct: 234 PSISLENVLAFGDGANDVCMFELAGY 259


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 269 TVFGCTGFVGRYVCNKLGKIGT 334
           T   CTG V  + C+ L KIG+
Sbjct: 691 TSVNCTGIVLSFCCDNLAKIGS 712


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 398 LXQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYE 505
           L +   +P HL+ EE    A +Y N + ++   +YE
Sbjct: 272 LQKAFLSPDHLIVEEDFYNASKYLNAISDIPFLNYE 307


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 12  YTLALSLSILNGSIINC 62
           Y+LAL +SI +GS+I C
Sbjct: 397 YSLALCISIFDGSLIFC 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,136,606
Number of Sequences: 5004
Number of extensions: 40927
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)