Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28g03
         (562 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L04490-1|AAA36350.1|  375|Homo sapiens NADH dehydrogenase (ubiqu...   134   3e-31
BC111546-1|AAI11547.1|  377|Homo sapiens NADH dehydrogenase (ubi...   134   3e-31
BC015837-1|AAH15837.1|  377|Homo sapiens NADH dehydrogenase (ubi...   134   3e-31
BC009311-1|AAH09311.1|  377|Homo sapiens NADH dehydrogenase (ubi...   134   3e-31
AF050641-1|AAD42055.1|  377|Homo sapiens NADH-ubiquinone oxidore...   134   3e-31
BC003351-1|AAH03351.1|  338|Homo sapiens Similar to NADH dehydro...   133   5e-31

>L04490-1|AAA36350.1|  375|Homo sapiens NADH dehydrogenase
           (ubiquinone) protein.
          Length = 375

 Score =  134 bits (323), Expect = 3e-31
 Identities = 63/113 (55%), Positives = 83/113 (73%)
 Frame = +2

Query: 200 RKPNLAAYKRGTGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQR 379
           R+ + A    G GGRSS +GIVATVFG TGF+GRYV N LG++G+Q+I+PYR D YD   
Sbjct: 32  RQLHHALMPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMH 91

Query: 380 LKVCGDLXQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYETXNFKYNDVHV 538
           L+  GDL Q+LF  +   D++SI + V++SNVVINL+GRD+ET NF + DV V
Sbjct: 92  LRPMGDLGQLLFLEWDARDKDSIRRVVQHSNVVINLIGRDWETKNFDFEDVFV 144


>BC111546-1|AAI11547.1|  377|Homo sapiens NADH dehydrogenase
           (ubiquinone) 1 alpha subcomplex, 9, 39kDa protein.
          Length = 377

 Score =  134 bits (323), Expect = 3e-31
 Identities = 63/113 (55%), Positives = 83/113 (73%)
 Frame = +2

Query: 200 RKPNLAAYKRGTGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQR 379
           R+ + A    G GGRSS +GIVATVFG TGF+GRYV N LG++G+Q+I+PYR D YD   
Sbjct: 34  RQLHHALMPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMH 93

Query: 380 LKVCGDLXQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYETXNFKYNDVHV 538
           L+  GDL Q+LF  +   D++SI + V++SNVVINL+GRD+ET NF + DV V
Sbjct: 94  LRPMGDLGQLLFLEWDARDKDSIRRVVQHSNVVINLIGRDWETKNFDFEDVFV 146


>BC015837-1|AAH15837.1|  377|Homo sapiens NADH dehydrogenase
           (ubiquinone) 1 alpha subcomplex, 9, 39kDa protein.
          Length = 377

 Score =  134 bits (323), Expect = 3e-31
 Identities = 63/113 (55%), Positives = 83/113 (73%)
 Frame = +2

Query: 200 RKPNLAAYKRGTGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQR 379
           R+ + A    G GGRSS +GIVATVFG TGF+GRYV N LG++G+Q+I+PYR D YD   
Sbjct: 34  RQLHHALMPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMH 93

Query: 380 LKVCGDLXQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYETXNFKYNDVHV 538
           L+  GDL Q+LF  +   D++SI + V++SNVVINL+GRD+ET NF + DV V
Sbjct: 94  LRPMGDLGQLLFLEWDARDKDSIRRVVQHSNVVINLIGRDWETKNFDFEDVFV 146


>BC009311-1|AAH09311.1|  377|Homo sapiens NADH dehydrogenase
           (ubiquinone) 1 alpha subcomplex, 9, 39kDa protein.
          Length = 377

 Score =  134 bits (323), Expect = 3e-31
 Identities = 63/113 (55%), Positives = 83/113 (73%)
 Frame = +2

Query: 200 RKPNLAAYKRGTGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQR 379
           R+ + A    G GGRSS +GIVATVFG TGF+GRYV N LG++G+Q+I+PYR D YD   
Sbjct: 34  RQLHHALMPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMH 93

Query: 380 LKVCGDLXQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYETXNFKYNDVHV 538
           L+  GDL Q+LF  +   D++SI + V++SNVVINL+GRD+ET NF + DV V
Sbjct: 94  LRPMGDLGQLLFLEWDARDKDSIRRVVQHSNVVINLIGRDWETKNFDFEDVFV 146


>AF050641-1|AAD42055.1|  377|Homo sapiens NADH-ubiquinone
           oxidoreductase 39kDa subunit protein.
          Length = 377

 Score =  134 bits (323), Expect = 3e-31
 Identities = 63/113 (55%), Positives = 83/113 (73%)
 Frame = +2

Query: 200 RKPNLAAYKRGTGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQR 379
           R+ + A    G GGRSS +GIVATVFG TGF+GRYV N LG++G+Q+I+PYR D YD   
Sbjct: 34  RQLHHALMPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMH 93

Query: 380 LKVCGDLXQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYETXNFKYNDVHV 538
           L+  GDL Q+LF  +   D++SI + V++SNVVINL+GRD+ET NF + DV V
Sbjct: 94  LRPMGDLGQLLFLEWDARDKDSIRRVVQHSNVVINLIGRDWETKNFDFEDVFV 146


>BC003351-1|AAH03351.1|  338|Homo sapiens Similar to NADH
           dehydrogenase (ubiquinone) 1 alpha subcomplex, 9 (39kD)
           protein.
          Length = 338

 Score =  133 bits (321), Expect = 5e-31
 Identities = 61/103 (59%), Positives = 79/103 (76%)
 Frame = +2

Query: 230 GTGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDLXQV 409
           G GGRSS +GIVATVFG TGF+GRYV N LG++G+Q+I+PYR D YD   L+  GDL Q+
Sbjct: 5   GKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQL 64

Query: 410 LFTPYHLLDEESIAKAVRYSNVVINLVGRDYETXNFKYNDVHV 538
           LF  +   D++SI + V++SNVVINL+GRD+ET NF + DV V
Sbjct: 65  LFLEWDARDKDSIRRVVQHSNVVINLIGRDWETKNFDFEDVFV 107


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,477,714
Number of Sequences: 237096
Number of extensions: 1542332
Number of successful extensions: 1800
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1800
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5646880600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)