Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28g02
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...   246   3e-66
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    62   1e-10
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    45   1e-05
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    27   1.9  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   5.9  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   7.9  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    25   7.9  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   7.9  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score =  246 bits (601), Expect = 3e-66
 Identities = 117/161 (72%), Positives = 138/161 (85%)
 Frame = +2

Query: 209 EISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNL 388
           E+ +ILEERI GA  +A + E+GRVLSIGDGIAR+ GL N+QAEE+VEFSSG+KGMALNL
Sbjct: 35  EVPSILEERIRGAYNQAQMMESGRVLSIGDGIARISGLSNVQAEELVEFSSGIKGMALNL 94

Query: 389 EPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVXALGNPIDGKGPIDTKSR 568
           E D VG V+FGND+L++EG++VKRT  IVDVPVGE +LGRVV ALGNPIDGKGPI T  R
Sbjct: 95  EADTVGCVLFGNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGPIKTTER 154

Query: 569 MRVGIKAPGIIPRVSVREPMXTGIKAVDSLVPIGRGQRELI 691
            RV +KAPGI+PR SV EPM TG+KA+DS+VPIGRGQRELI
Sbjct: 155 RRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRGQRELI 195


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 31/90 (34%), Positives = 48/90 (53%)
 Frame = +2

Query: 407 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVXALGNPIDGKGPIDTKSRMRVGIK 586
           + + G + L++ G  V  TG+ + +PVG   LGR++  +G P+D +GPI       +   
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHAD 166

Query: 587 APGIIPRVSVREPMXTGIKAVDSLVPIGRG 676
           AP    + +  E + TGIK VD L P  RG
Sbjct: 167 APSFEEQSTTPEILETGIKVVDLLAPYARG 196


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
 Frame = +2

Query: 461 TGAIVDVPVGEQILGRVVXALGNPIDGKGPIDTKSRMRVGIKAPGIIP--RVSVREPMXT 634
           TG  + +PV E +LGRV    G PID KGP +  +   + I    I P  R+   E + T
Sbjct: 92  TGHSMRIPVSEDMLGRVFNGSGLPID-KGP-NLLAEDYLDINGSPINPYARIYPEEMIQT 149

Query: 635 GIKAVDSLVPIGRGQR 682
           GI ++D L  I RGQ+
Sbjct: 150 GISSIDGLNSIARGQK 165


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 667 NWYQRVNSLDTSXHRLTHRHPGNDT 593
           N  QR++SLD+S       HPGN T
Sbjct: 169 NKVQRLSSLDSSQDSFQEEHPGNVT 193


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -2

Query: 347 PSPQPGCSSSHKHERYHHQCSRH-DQSLLDQPWAR 246
           P P  G    HK  ++   CS H D S+ ++P A+
Sbjct: 405 PVPHNGTKPDHKPWKHEEHCSCHEDHSVHERPSAK 439


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 493 LSDGNVYDSTSTLDNISFLDKLVIT 419
           L  GN+Y+STS  + +S LD   IT
Sbjct: 49  LEVGNIYNSTSASEILSTLDAKYIT 73


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 510 TRPRICSPTGTSTIAP 463
           TRPR+ +P+ +ST+ P
Sbjct: 55  TRPRVSAPSSSSTVVP 70


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 168 HLANYMSQPPTKLPRSPPSSKRGSLEP 248
           H  +Y+S P      SPP+SK  S EP
Sbjct: 113 HQNDYISSPHADFSFSPPASKIQSHEP 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,092
Number of Sequences: 5004
Number of extensions: 57552
Number of successful extensions: 179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)