Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28f23
(448 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 49 4e-07
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 44 1e-05
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 30 0.19
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 29 0.33
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 29 0.43
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 27 0.99
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 27 1.7
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 26 2.3
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 26 2.3
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 26 3.0
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 25 4.0
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 25 4.0
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 5.3
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 25 5.3
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 25 7.0
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 24 9.3
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc... 24 9.3
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 24 9.3
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 48.8 bits (111), Expect = 4e-07
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +2
Query: 272 SITNAYKK-PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNATLKDQLDVL 445
+I + Y + PV+ +G +L+D +G++Y+D G+ S+GH HP+V DQ L
Sbjct: 46 NIISVYARYPVVAAKGEGSYLFDKEGRKYIDFTSGVAVTSLGHAHPEVARLAADQCSKL 104
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 43.6 bits (98), Expect = 1e-05
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = +2
Query: 227 SYQQVEQMKGVYMPPSITNAYKKPVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHP 406
S +Q+E ++ Y + N + PV ++ ++D +G+ YLD V+ GHCHP
Sbjct: 12 STEQIEVLENEY---AAHNYHPLPVCFSKAKGAKVWDPEGREYLDFLSAYSAVNQGHCHP 68
Query: 407 KVNATLKDQ 433
K+ L +Q
Sbjct: 69 KIIEALVEQ 77
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 29.9 bits (64), Expect = 0.19
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 296 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNATLKDQLDVL 445
P ++ + +YD LD G ++ +GH HP + A ++ L L
Sbjct: 33 PKIIVRAKGCCVYDEQDNAILDFTSGQMSAILGHSHPDITACIEKNLPKL 82
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 29.1 bits (62), Expect = 0.33
Identities = 13/48 (27%), Positives = 19/48 (39%)
Frame = +2
Query: 296 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNATLKDQLD 439
P+ + G+ L D DG Y D + GH +P + L D
Sbjct: 52 PIFIEAGYGSKLRDVDGHEYTDFLNELTAGIYGHSNPVIKKALMQGFD 99
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 28.7 bits (61), Expect = 0.43
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 278 TNAYKKPVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKV 412
T+ +P + + +LY DG R +D GG +GH + +V
Sbjct: 22 TSPNHRPPTVVRAEGVYLYLEDGTRIMDATGGAAVACLGHGNKEV 66
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 27.5 bits (58), Expect = 0.99
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +2
Query: 122 EMANRGT--KLCFDIVRTYSTAKMPPTDF 202
E+ANR KLC+ I++ A +PPT+F
Sbjct: 355 EIANRPRDFKLCYWILKEIGVATIPPTEF 383
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 26.6 bits (56), Expect = 1.7
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 218 TGPSYQQVEQMKGVYMPPSITNAYKKPVLL 307
+G SY+ V+ + VY+ PS + A KKP ++
Sbjct: 977 SGDSYRTVKSNQTVYIHPSSSVAEKKPKVI 1006
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 2.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 418 CIYFWMTMAHGDGDDSTEQIQ 356
C+YF+ T+ + +GDD IQ
Sbjct: 48 CVYFYHTLENQEGDDERPLIQ 68
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 2.3
Identities = 9/34 (26%), Positives = 16/34 (47%)
Frame = -2
Query: 414 FTFG*QWPTETVTIPPNRSRYLLPSLSYNHCMCP 313
+T+ +W E + P Y++ YN +CP
Sbjct: 108 YTYNSRWKIEIPSYPVREIPYVVADTPYNKLLCP 141
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 25.8 bits (54), Expect = 3.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 335 DNDGKRYLDLFGGIVTVSVGH 397
D G +LDL GG+ V+VG+
Sbjct: 85 DEKGTEHLDLIGGVGVVTVGN 105
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 25.4 bits (53), Expect = 4.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 231 YEGPVYGLGTKSVGGILAVLYVLTMSKHNFVPLLAISMCFSVEAIAIC 88
+E P+ L K V + +L L ++ PL+ I+ EA+A C
Sbjct: 246 FENPLILLSEKKVSAVQDILPSLELAAQQRRPLVIIAEDVDGEALAAC 293
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 4.0
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 285 PIRSRCFSPRGTCSGYTTTT 344
P R+ C+SP G Y T T
Sbjct: 36 PARNACYSPNGKLFAYATAT 55
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 5.3
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2
Query: 197 DFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKP 298
D P P PS Q + MPP +T Y +P
Sbjct: 454 DGSPDPPAAPSIQNSLSVHESEMPPHVTRDYTQP 487
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.0 bits (52), Expect = 5.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 42 IPASHRSERVGQF*CDILQSPQQRNTSKWLI-EEQNYASTSS 164
+PA ++ R GQ C ILQ + S +L E N S S+
Sbjct: 65 VPAIDKNSRGGQDKCGILQEVGTNSPSYYLFGHESNICSASA 106
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -3
Query: 242 LLVGTKVPCTVWARNPSAAFWPC 174
+ VGT +WA P ++ W C
Sbjct: 511 ITVGTDATLRIWALLPGSSAWKC 533
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 24.2 bits (50), Expect = 9.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 348 LPSLSYNHCMCPWVRSTGF 292
LPS S N+C W R GF
Sbjct: 230 LPSSSQNNCKANWKRWFGF 248
>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 553
Score = 24.2 bits (50), Expect = 9.3
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -2
Query: 378 TIPPNRSRYLLP-SLSYNHCMCPWVRSTGFL*AFVIEGGM*TPFICSTCWYEGPVYGLGT 202
+IP S YL+ ++S W G+ ++ G+ + S W GP+ G+
Sbjct: 27 SIPSRSSLYLIALTVSLLGVQLTWSVELGYGTPYLFSLGLRKEWT-SIIWIAGPLTGILI 85
Query: 201 KSVGGILA 178
+ + GIL+
Sbjct: 86 QPIAGILS 93
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 24.2 bits (50), Expect = 9.3
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 257 VYMPPSITNAYKKPVLLTQGHMQWLYDNDGKRYLDLFGGIV-TVSVGHCHPKVNATLKDQ 433
V+ P S N+ K + Q DN+G Y D F +V VS P V A LK +
Sbjct: 255 VWQPRSQKNSEKGSSIYPQNSFNASIDNEGGPYEDFFKVVVDNVSSRDWQP-VLANLKLE 313
Query: 434 L 436
L
Sbjct: 314 L 314
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,901,996
Number of Sequences: 5004
Number of extensions: 38991
Number of successful extensions: 120
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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