Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28f23
         (448 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97405-5|AAB53010.3|  444|Caenorhabditis elegans Hypothetical pr...    87   5e-18
U41534-14|AAV34796.1|  226|Caenorhabditis elegans Hypothetical p...    46   2e-05
U41534-13|AAD31050.2|  422|Caenorhabditis elegans Hypothetical p...    46   2e-05
U80931-3|AAO91701.1|  160|Caenorhabditis elegans Hypothetical pr...    43   1e-04
U80931-2|AAB37999.1|  467|Caenorhabditis elegans Hypothetical pr...    43   1e-04
U41534-12|AAM22027.1|  357|Caenorhabditis elegans Hypothetical p...    42   2e-04
U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical pr...    27   4.7  
CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical ...    27   4.7  
AF067609-1|ABB51195.1|  394|Caenorhabditis elegans Hypothetical ...    27   8.2  

>U97405-5|AAB53010.3|  444|Caenorhabditis elegans Hypothetical
           protein T09B4.8 protein.
          Length = 444

 Score = 87.0 bits (206), Expect = 5e-18
 Identities = 37/72 (51%), Positives = 53/72 (73%)
 Frame = +2

Query: 233 QQVEQMKGVYMPPSITNAYKKPVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKV 412
           Q+V+ ++ + +P      YK  +L+T+G  Q+L+D++GK+YLD FGGIVTVSVGHCHPK+
Sbjct: 2   QRVQALRPL-LPKGHVTYYKDQLLITKGEKQFLFDSNGKKYLDFFGGIVTVSVGHCHPKI 60

Query: 413 NATLKDQLDVLW 448
           NA L +Q   LW
Sbjct: 61  NAALTEQAQKLW 72


>U41534-14|AAV34796.1|  226|Caenorhabditis elegans Hypothetical
           protein C16A3.10c protein.
          Length = 226

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = +2

Query: 296 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNATLKDQLDVL 445
           PV L++G   +++D +GK+Y D       V+ GHCHPK+   +++Q   L
Sbjct: 40  PVALSKGEGCFVWDVEGKKYFDFLAAYSAVNQGHCHPKLLKVVQEQASTL 89


>U41534-13|AAD31050.2|  422|Caenorhabditis elegans Hypothetical
           protein C16A3.10a protein.
          Length = 422

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = +2

Query: 296 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNATLKDQLDVL 445
           PV L++G   +++D +GK+Y D       V+ GHCHPK+   +++Q   L
Sbjct: 40  PVALSKGEGCFVWDVEGKKYFDFLAAYSAVNQGHCHPKLLKVVQEQASTL 89


>U80931-3|AAO91701.1|  160|Caenorhabditis elegans Hypothetical
           protein T01B11.2b protein.
          Length = 160

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +2

Query: 296 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNATLKDQL 436
           P ++++  MQ+LYD    ++LD    +    VGHCHPKV   +  QL
Sbjct: 50  PFMVSRASMQYLYDEKSNKFLDCISNV--QHVGHCHPKVVEAISKQL 94


>U80931-2|AAB37999.1|  467|Caenorhabditis elegans Hypothetical
           protein T01B11.2a protein.
          Length = 467

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +2

Query: 296 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNATLKDQL 436
           P ++++  MQ+LYD    ++LD    +    VGHCHPKV   +  QL
Sbjct: 50  PFMVSRASMQYLYDEKSNKFLDCISNV--QHVGHCHPKVVEAISKQL 94


>U41534-12|AAM22027.1|  357|Caenorhabditis elegans Hypothetical
           protein C16A3.10b protein.
          Length = 357

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +2

Query: 296 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKV 412
           PV L++G   +++D +GK+Y D       V+ GHCHPK+
Sbjct: 40  PVALSKGEGCFVWDVEGKKYFDFLAAYSAVNQGHCHPKL 78


>U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical
           protein K07E3.1 protein.
          Length = 1061

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 182 KMPPTDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKP 298
           K+ P  + P+   G  YQQ++Q      PP + NAY+ P
Sbjct: 204 KVHPMPYHPQMNKGNHYQQLQQYT---QPPPVYNAYQPP 239


>U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical
           protein T10E10.3 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 256 SFHLFYLLVRRSRVRSGHEIRRRHFGRAVRSDDVEA*FCSSIS 128
           SFH   L   R+R R     R R    + RSDDV A   S+++
Sbjct: 197 SFHTCLLYYLRNRFRHFFPARTRSARNSTRSDDVPAPLLSNVT 239


>Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical
           protein F28C1.1 protein.
          Length = 672

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 105 QQRNTSKWLIEEQNYASTSSERTARPKCRRRISCPDRTRDLRTNK 239
           ++R  S+     ++ + ++S R  R K RRR    DR+RD R  K
Sbjct: 460 RERRRSRSRDRRRHRSRSTSRRRQRSKDRRRDRSRDRSRDERNEK 504


>CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical
           protein C42C1.1 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 234 WYEGPVYGLGTKSVGGILAV-LYVLTMSKHNFVPLLAIS 121
           W+ G + G+G  + GG+LA  L ++  S ++ V LL +S
Sbjct: 135 WWIGIIIGIGLYTAGGLLAYSLAIVATSFYHTVFLLVLS 173


>AF067609-1|ABB51195.1|  394|Caenorhabditis elegans Hypothetical
           protein C23H5.11 protein.
          Length = 394

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 147 NFVPLLAISMCFSVEAIAICHTRTALLVLN 58
           NF+P+L     F +  + +C T   LL+LN
Sbjct: 93  NFLPVLLALFHFVISTLCLCFTIRLLLLLN 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,990,766
Number of Sequences: 27780
Number of extensions: 246094
Number of successful extensions: 767
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)