Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28f23
         (448 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   2.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   2.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   4.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   4.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   4.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   4.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.1  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 114 NTSKWLIEEQNYASTSSERTARP 182
           +T +WL+ E+    TSS  +  P
Sbjct: 72  STGEWLLTEEKLPKTSSNASVEP 94


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/15 (46%), Positives = 14/15 (93%)
 Frame = -3

Query: 113 SLLRRLQYVTLELPY 69
           +LLR++Q +++E+PY
Sbjct: 334 ALLRKMQEMSIEVPY 348


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 389 VGHCHPKVNATLKDQL 436
           + + HPK  ATL DQ+
Sbjct: 199 IDYVHPKDKATLADQI 214


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 389 VGHCHPKVNATLKDQL 436
           + + HPK  ATL DQ+
Sbjct: 194 IDYVHPKDKATLADQI 209


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 372  PPNRSRYLLPSLSYNHC 322
            PPNR    +P  +YN C
Sbjct: 1648 PPNRKLPPVPGSNYNTC 1664


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 292 EAGASHPGAHAVVIRQRRQEIPGSVRWN 375
           +  AS PG   +V      E+PGS  W+
Sbjct: 403 DVAASGPGLAFLVYPSAVLELPGSSIWS 430


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 85  VTYCNRLNRETHRNG 129
           VT C   N ET+R G
Sbjct: 562 VTKCKATNEETYRGG 576


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 85  VTYCNRLNRETHRNG 129
           VT C   N ET+R G
Sbjct: 562 VTKCKATNEETYRGG 576


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 85  VTYCNRLNRETHRNG 129
           VT C   N ET+R G
Sbjct: 562 VTKCKATNEETYRGG 576


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -1

Query: 310 GEKHRLLIG 284
           G+KH+LLIG
Sbjct: 184 GQKHKLLIG 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,153
Number of Sequences: 438
Number of extensions: 2966
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)