Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28f22
         (154 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28739-8|AAB93452.2|  419|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short for...    26   4.2  
U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form...    26   4.2  
Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z78063-5|CAB01501.1|  228|Caenorhabditis elegans Hypothetical pr...    25   5.5  
AL031624-2|CAA20942.1|  244|Caenorhabditis elegans Hypothetical ...    25   5.5  
Z70780-6|CAA94823.1|  614|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>U28739-8|AAB93452.2|  419|Caenorhabditis elegans Hypothetical
           protein C17G10.2 protein.
          Length = 419

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 146 HRREEGNR*FRVRKWAW 96
           H +EEGN+ F+ +K+ W
Sbjct: 97  HHKEEGNKHFKFKKYRW 113


>Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical
           protein F15C11.1 protein.
          Length = 744

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +1

Query: 52  RCFRCYRSCGCRQPHQAHFRTRNHRFPSSRRWC 150
           +C  C R   C+   Q H+RT     P   + C
Sbjct: 306 QCILCRRVLSCKSALQMHYRTHTGERPFKCKIC 338


>U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short form
           protein.
          Length = 715

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +1

Query: 52  RCFRCYRSCGCRQPHQAHFRTRNHRFPSSRRWC 150
           +C  C R   C+   Q H+RT     P   + C
Sbjct: 277 QCILCRRVLSCKSALQMHYRTHTGERPFKCKIC 309


>U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form
           protein.
          Length = 744

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +1

Query: 52  RCFRCYRSCGCRQPHQAHFRTRNHRFPSSRRWC 150
           +C  C R   C+   Q H+RT     P   + C
Sbjct: 306 QCILCRRVLSCKSALQMHYRTHTGERPFKCKIC 338


>Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical
           protein T07D10.3 protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 22  QTKVFKNEILRCFRCYRSCGCRQPHQAHFRTRNHRFP 132
           Q K F   +  C  C R+   R  + AH   R+H  P
Sbjct: 148 QQKHFLKPVYICNCCNRTWSSRNEYVAHLHGRDHMCP 184


>Z78063-5|CAB01501.1|  228|Caenorhabditis elegans Hypothetical
           protein F45D3.4a protein.
          Length = 228

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 151 STTVGKREIDDFGCENGLGGVGDSHSYDSN 62
           +TT  ++  D F  +  LG +GD H  D N
Sbjct: 21  TTTTTEKPDDSFDLDLFLGAMGDGHFADGN 50


>AL031624-2|CAA20942.1|  244|Caenorhabditis elegans Hypothetical
           protein H16D19.3 protein.
          Length = 244

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 22  QTKVFKNEILRCFRCYRSCGCRQPHQAHFRTRNHRFP 132
           Q K F   +  C  C R+   R  + AH   R+H  P
Sbjct: 136 QQKHFLKPVYICNCCNRTWSSRSEYVAHLHGRDHMCP 172


>Z70780-6|CAA94823.1|  614|Caenorhabditis elegans Hypothetical
           protein F46B6.7 protein.
          Length = 614

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 1   DQFDHCKQTKVFKNEILRCFRCYRSCGCRQPHQAHFRTRNHR 126
           +  +H K+ K+ +NE + C + +     R     H R RNHR
Sbjct: 344 EYIEHLKE-KLHRNECIYCEKIFPD---RNTLMDHMRKRNHR 381


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,375,272
Number of Sequences: 27780
Number of extensions: 46794
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 12,740,198
effective HSP length: 31
effective length of database: 11,879,018
effective search space used: 225701342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)