Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28f20
         (526 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0299 + 21759739-21761238                                         28   5.3  
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636...    27   9.2  
08_01_0882 - 8663006-8663068,8663260-8663328,8663410-8663515,866...    27   9.2  

>02_04_0299 + 21759739-21761238
          Length = 499

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +1

Query: 217 IWTL--VIGLALLLYLKQTYSYFS--KHEIKSVTPLPILGNMGKIVFKFNHLVDDISQLY 384
           +W L   + +A+L YL      ++  K      TPLP++GN+      F+H + D+++++
Sbjct: 6   VWLLWGALSVAVLFYLSTLRRRYAGGKPLPPGPTPLPLIGNLHLAGGTFHHKLRDLARVH 65


>12_01_1092 -
           11362094-11362367,11362739-11362795,11363256-11363683,
           11364350-11365462
          Length = 623

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 180 YV*QRIISFFVFLLFRLEMLPTFLNMNIKSLLFFS 76
           Y+  R I  F+F+ F LE    FLN   +  +F++
Sbjct: 426 YLLMRFIDDFIFISFSLEHAQKFLNRMRRGFVFYN 460


>08_01_0882 -
           8663006-8663068,8663260-8663328,8663410-8663515,
           8663889-8663944,8664163-8664222,8664310-8664529,
           8664561-8664655,8664757-8664882,8664954-8665008,
           8666163-8666290
          Length = 325

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 195 KKLFFYV*QRIISFFVFLLFRLEMLP 118
           K L FY+ Q + SFF+ L    + LP
Sbjct: 147 KSLIFYLQQNVTSFFIVLFCTYQFLP 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,791,334
Number of Sequences: 37544
Number of extensions: 244980
Number of successful extensions: 515
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)