Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28f20
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79600-6|CAB01879.2|  529|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily ass...    28   4.7  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    28   4.7  
U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily ass...    28   4.7  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    28   4.7  
AF106573-1|AAC78152.2|  336|Caenorhabditis elegans Hypothetical ...    27   6.2  
AC024836-1|AAK39347.2|  475|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical p...    27   8.2  
Z81513-1|CAB04174.1|  346|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z72516-1|CAA96687.2|  156|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z50756-1|CAA90637.2|  737|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U40947-1|AAC48068.1|  610|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z79600-6|CAB01879.2|  529|Caenorhabditis elegans Hypothetical
           protein F59C6.8 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 365 MTFRNCTIIFQKERFVGRYEFVNPVI-YIXDIEIVKRITIKDFEH 496
           M  ++C +IF+ +RFV  + F+   + ++  + I+  +TI D +H
Sbjct: 1   MMLKSCGLIFKGKRFVRLFIFIAVCLGFLIAVTILAGLTIFDRQH 45


>U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform d protein.
          Length = 1379

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/43 (30%), Positives = 28/43 (65%)
 Frame = +2

Query: 77   EKNNSDLMFILRNVGSISNLNNKKTKKEIIRCQT*KKSFLQVK 205
            E+N S+++++ ++  S SNL+  +TK + I+ Q+ +  F + K
Sbjct: 1186 EENASNMVYLQKSESSSSNLSGAETKMKHIQRQSSEARFSEFK 1228


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/43 (30%), Positives = 28/43 (65%)
 Frame = +2

Query: 77   EKNNSDLMFILRNVGSISNLNNKKTKKEIIRCQT*KKSFLQVK 205
            E+N S+++++ ++  S SNL+  +TK + I+ Q+ +  F + K
Sbjct: 1186 EENASNMVYLQKSESSSSNLSGAETKMKHIQRQSSEARFSEFK 1228


>U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform a protein.
          Length = 1633

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/43 (30%), Positives = 28/43 (65%)
 Frame = +2

Query: 77   EKNNSDLMFILRNVGSISNLNNKKTKKEIIRCQT*KKSFLQVK 205
            E+N S+++++ ++  S SNL+  +TK + I+ Q+ +  F + K
Sbjct: 1186 EENASNMVYLQKSESSSSNLSGAETKMKHIQRQSSEARFSEFK 1228


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/43 (30%), Positives = 28/43 (65%)
 Frame = +2

Query: 77   EKNNSDLMFILRNVGSISNLNNKKTKKEIIRCQT*KKSFLQVK 205
            E+N S+++++ ++  S SNL+  +TK + I+ Q+ +  F + K
Sbjct: 1186 EENASNMVYLQKSESSSSNLSGAETKMKHIQRQSSEARFSEFK 1228


>AF106573-1|AAC78152.2|  336|Caenorhabditis elegans Hypothetical
           protein F52D2.1 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 68  N*LEKNNSDLMFILRNVGSISNLNNKKTKKEIIR 169
           N ++    DL F+L++V ++   N  K +KEII+
Sbjct: 122 NFMDVGFKDLKFLLKHVSTLGIYNYAKNRKEIIK 155


>AC024836-1|AAK39347.2|  475|Caenorhabditis elegans Hypothetical
           protein Y59E1A.1 protein.
          Length = 475

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 68  N*LEKNNSDLMFILRNVGSISNLNNKKTKKEIIR 169
           N ++    DL F+L++V ++   N  K +KEII+
Sbjct: 122 NFMDVGFKDLKFLLKHVSTLGIYNYAKNRKEIIK 155


>Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.12 protein.
          Length = 279

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/66 (24%), Positives = 36/66 (54%)
 Frame = +1

Query: 214 IIWTLVIGLALLLYLKQTYSYFSKHEIKSVTPLPILGNMGKIVFKFNHLVDDISQLYNNF 393
           ++++L+  L+LLL+++      S H +  VT + +L ++  ++F  + L+     LY+ F
Sbjct: 178 VVFSLIETLSLLLFIRLYIWKRSSHLLHKVTQIALLDSLMLLLFNISPLL-----LYSYF 232

Query: 394 PERKIR 411
               +R
Sbjct: 233 SSTLVR 238


>Z81513-1|CAB04174.1|  346|Caenorhabditis elegans Hypothetical
           protein F26D2.1 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -3

Query: 380 NCEM--SSTKWLNLKTILPMLPSIGSGVTLLISCLLK*EYVCFRYSKRAKP 234
           NC +  S + W++ K +LP L +I SG+ L++   +  +++ +R+     P
Sbjct: 70  NCILYFSLSTWISAKPLLPWLFAIWSGMYLVVIAFISIQFI-YRFMNFFNP 119


>Z72516-1|CAA96687.2|  156|Caenorhabditis elegans Hypothetical
           protein T25G3.1 protein.
          Length = 156

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 64  DKLIGEKQQRFDVHIKKRGKHL*SEQQENKKRDN-PLSNIKE 186
           DKLI E +  F    K+ G    ++++E KK+ N PL  +++
Sbjct: 102 DKLIAEGKITFKKPTKRAGDSAAADEEEKKKKKNAPLPKVQK 143


>Z50756-1|CAA90637.2|  737|Caenorhabditis elegans Hypothetical
           protein T08D10.2 protein.
          Length = 737

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
 Frame = -1

Query: 478 CDSLYDLNVXDVDHRIYKLVSTNESFFLEN--------YCTIAKCHLLNG 353
           CDSL +L+   +   +++ V  NE+   EN        Y  +A+CH++NG
Sbjct: 228 CDSLRNLDESVITTLLHQ-VPLNENIMSENTIVFSKGKYVPVARCHVING 276


>U40947-1|AAC48068.1|  610|Caenorhabditis elegans Hypothetical
           protein R03E9.2 protein.
          Length = 610

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 310 LPILGNMGKIVFKFNHLVDDISQLYN 387
           +P++ N GK+ FK+N L+  I+  ++
Sbjct: 100 IPVVFNGGKLTFKYNQLIVGINYFFH 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,840,731
Number of Sequences: 27780
Number of extensions: 247933
Number of successful extensions: 605
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)