Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28f20
         (526 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    33   0.002
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   1.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.4  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 32.7 bits (71), Expect = 0.002
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +1

Query: 211 IIIWTLVIGLALLLYLKQTYSYFSKHEIKSVTPLPILGNMGKIVF---KFNHLVDDISQL 381
           I+    V+ LAL  YL  T+ ++    +    P+P  G    ++       H V DI + 
Sbjct: 7   ILCGIAVLFLALYYYLTSTFDFWKSRGVVGPKPVPFFGTTKDLILVKKSTAHFVKDIYEK 66

Query: 382 YNNFP 396
           Y N P
Sbjct: 67  YKNEP 71


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 431 LQTRIYQRIFLSGKLLYNCEMSST 360
           +   +Y RIF +G +LY+  +S T
Sbjct: 134 IMPNVYIRIFPNGSVLYSIRISLT 157


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 431 LQTRIYQRIFLSGKLLYNCEMSST 360
           +   +Y RIF +G +LY+  +S T
Sbjct: 134 IMPNVYIRIFPNGSVLYSIRISLT 157


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +1

Query: 37  LNNSVITKTDKLIGEKQQRFDVHIKKRGKHL*SEQQENKKRDNPL 171
           LNN+  T TD  +G K       ++  G H  +   E+  +  PL
Sbjct: 201 LNNNDATPTDFSMGVKNNHVSSKVEGNGVHEENSPLEDNIKCEPL 245


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 397 LENYCTIAKCHLLNG 353
           LE+YC I   HL+ G
Sbjct: 358 LEDYCNIVATHLVCG 372


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,111
Number of Sequences: 438
Number of extensions: 3002
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)