Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28f18
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    92   4e-20
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    37   0.002
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...    33   0.022
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    28   0.81 
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    28   0.81 
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     28   0.81 
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   3.3  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   5.7  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    25   7.5  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   7.5  
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|...    25   10.0 

>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 92.3 bits (219), Expect = 4e-20
 Identities = 43/99 (43%), Positives = 65/99 (65%)
 Frame = +1

Query: 256 SASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADF 435
           +  PI T ++V+ +KF  G +IA D L SYGSLARF D  R+ KV D  ++G GGD +D+
Sbjct: 36  TVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDY 95

Query: 436 QYLKDIIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYTR 552
           Q ++ ++++  I E   GDG  L+P  +H +L++VLY R
Sbjct: 96  QQIQRLLEKLEIKEGNYGDGYALQPSYIHEYLSKVLYAR 134


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 27/88 (30%), Positives = 41/88 (46%)
 Frame = +1

Query: 283 TVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQQ 462
           T + +  D   ++AGDT    G     R  PRV +V D +++G  G  AD   L   IQQ
Sbjct: 15  TTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRIQQ 74

Query: 463 KIIDERCVGDGLQLKPRSLHCWLTRVLY 546
           + ID        ++  +S  C +  +LY
Sbjct: 75  R-IDLYHDNHERKMSAQSCACMVRTLLY 101


>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 33.5 bits (73), Expect = 0.022
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +1

Query: 271 TTTTTVIGVKFDKGCVIAG-DTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 447
           +T TT++GV   K C++ G DT  + G +   ++C ++  ++  I     G  AD +++ 
Sbjct: 33  STGTTIVGV-IAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVT 91

Query: 448 DIIQQKI 468
            +I   I
Sbjct: 92  SMISSNI 98


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 145 PTPLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTA-HSASPITTT 279
           P+PL    P+P  F N P  AS   P+       TA  SASP+ +T
Sbjct: 364 PSPLQNTNPAPSTFPN-PSVASPAFPNSSTSNPSTAPASASPLAST 408


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 155 CGKTDRRLEHFIIFLEMLPQLLHPGTVYRILQLTQRAPSRPPQLSSELSLTRD 313
           CG+T   L+H ++  E   Q LHP  V    Q  Q+    PPQ  ++L +  D
Sbjct: 49  CGETG--LKHSLVHFE---QTLHPIVVTIARQPKQKINDEPPQKITKLEIRED 96


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 184 FYNFPGNASTIAPSRHGVQDFTAHSASPITTTTTVI 291
           +YN  G +S +  + HG+ DF +H    +  T T I
Sbjct: 254 YYNNDGASSWVFTADHGMSDFGSHGDGNLDNTRTPI 289


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 313  CVIAGDTLGSYGSLARFRDCPRVMKVNDLILL 408
            C  AG +LG Y +L+   D   +  + DL+ L
Sbjct: 1822 CAFAGHSLGEYSALSAMGDVLSIEALVDLVFL 1853


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -1

Query: 471 NDFLLNDILQILKISIVSSA 412
           NDFL+ D+L ILK+S  SS+
Sbjct: 14  NDFLIADMLLILKLSPRSSS 33


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 486 WRWSPAQAPFSALLVDSC 539
           WR++PA   +  LL+D C
Sbjct: 76  WRFTPASDKYDYLLIDRC 93


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 197 LEMLPQLLHPGTVYRILQLTQRAPSRPPQLSSEL 298
           +E++P L  PG   R+LQL +  PS P  +  E+
Sbjct: 4   IELIPGLPGPGR--RLLQLLKDLPSNPSVIVREI 35


>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 430 DFQYLKDIIQQKIIDERCVGDGLQ--LKPRSLHCWLTRVLYTR 552
           D  +LKD+ QQKI  +  +   +Q  +KP    C + R LY++
Sbjct: 31  DADFLKDLSQQKIDIQAALARTVQGAIKPMITQCCI-RQLYSK 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,285,876
Number of Sequences: 5004
Number of extensions: 43737
Number of successful extensions: 117
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)