Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28f18
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81079-4|CAB03081.1|  236|Caenorhabditis elegans Hypothetical pr...    76   2e-14
Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical pr...    31   0.74 
L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome bet...    31   0.74 
AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome co...    31   0.74 
Z36719-1|CAA85311.2|  576|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical...    28   4.0  
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U42438-4|AAM75371.1|  617|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    27   6.9  
Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    27   9.1  

>Z81079-4|CAB03081.1|  236|Caenorhabditis elegans Hypothetical
           protein F39H11.5 protein.
          Length = 236

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 35/104 (33%), Positives = 66/104 (63%)
 Frame = +1

Query: 241 DFTAHSASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGG 420
           D    + +P  T T+VI +++  G V+  D + SYG +AR+++  R  KVND +L+  GG
Sbjct: 5   DEVQRTLNPTCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGG 64

Query: 421 DYADFQYLKDIIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYTR 552
           D+ADF +L+++I+++++  +       + P++LH +LT +LY +
Sbjct: 65  DHADFHWLQNVIERQVLLWKRFDQ--DIGPKALHGYLTSLLYAK 106


>Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical
           protein ZK945.2 protein.
          Length = 250

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 25/82 (30%), Positives = 36/82 (43%)
 Frame = +1

Query: 205 ASTIAPSRHGVQDFTAHSASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVM 384
           AST +P     Q   A  A  +    T+I ++   G V+  D L S   L      PR+ 
Sbjct: 12  ASTFSPDGRIFQVEYAQKA--VDNAGTMIAIRGKNGVVVVADKLIS-SKLYTDNANPRMF 68

Query: 385 KVNDLILLGCGGDYADFQYLKD 450
            VND + +   G+Y D   LK+
Sbjct: 69  NVNDNVGVAVAGNYPDGFALKN 90


>L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome beta
           subunit protein 6 protein.
          Length = 258

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 274 TTTTVIGVKFDKGCVIAGDTLGSYGSLARF-RDCPRVMKVNDLILLGCGGDYADFQYLKD 450
           +T  + G  F    ++A DT  +   +    RD  ++  +ND I+L   G Y D   LK 
Sbjct: 53  STCAISGENF---AIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKK 109

Query: 451 IIQQKI 468
           ++Q ++
Sbjct: 110 VLQSRL 115


>AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome
           component C5 protein.
          Length = 258

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 274 TTTTVIGVKFDKGCVIAGDTLGSYGSLARF-RDCPRVMKVNDLILLGCGGDYADFQYLKD 450
           +T  + G  F    ++A DT  +   +    RD  ++  +ND I+L   G Y D   LK 
Sbjct: 53  STCAISGENF---AIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKK 109

Query: 451 IIQQKI 468
           ++Q ++
Sbjct: 110 VLQSRL 115


>Z36719-1|CAA85311.2|  576|Caenorhabditis elegans Hypothetical
           protein C06C3.3 protein.
          Length = 576

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 164 TDRRLEHFIIFLEMLPQLLHPGTVYRILQLTQRAP 268
           T ++ +H+I+FL+ L  LL   T  R L  TQ  P
Sbjct: 37  TRKQFKHWIVFLDALTDLLRTATAVRRLFTTQGIP 71


>AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical
           protein Y43F8C.16 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 219 SIQARCTGFYSSLSEPHHDHHNCH 290
           S +   T   SS+S P H HH CH
Sbjct: 344 STERTATTATSSVSTPKHPHHGCH 367


>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
           protein T23F1.5 protein.
          Length = 1262

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 130 GDTMNPTPLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTAH 255
           G+   PTP  +       F+  P +A    P  H  +DFT+H
Sbjct: 438 GERSTPTPQEEEEEMMRNFFPRPVSAQAYQPPGHQPEDFTSH 479


>U42438-4|AAM75371.1|  617|Caenorhabditis elegans Hypothetical
           protein C09G4.2c protein.
          Length = 617

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 531 QPAVQRTGLELETISNTALINDFLLN-DILQILKIS 427
           +P + ++    ETI N   +N FL N D  QI KIS
Sbjct: 50  RPIIGKSDAAFETIGNALRLNSFLRNLDATQIEKIS 85


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 166  GPSPGAFYNFPGNASTIAPSRHG 234
            GPSPG   N P N S + PS  G
Sbjct: 1396 GPSPGPSPNEPSNPSILGPSTGG 1418


>Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical
           protein ZK524.4 protein.
          Length = 1016

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 542 RTRVNQQCRERGLSWRPSP 486
           R+ +N +CR R  SWR  P
Sbjct: 379 RSNINSRCRSRSNSWRARP 397


>Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical
           protein ZK524.4 protein.
          Length = 1016

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 542 RTRVNQQCRERGLSWRPSP 486
           R+ +N +CR R  SWR  P
Sbjct: 379 RSNINSRCRSRSNSWRARP 397


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +1

Query: 208 STIAPSRHGVQDFTAHSASPITTTTTVI 291
           STIAPS  GV   ++ S+SP +T TT I
Sbjct: 395 STIAPSTQGVPT-SSKSSSPNSTPTTTI 421


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,927,123
Number of Sequences: 27780
Number of extensions: 261047
Number of successful extensions: 772
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)