Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28f14
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...   119   4e-28
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   1.5  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    27   2.7  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   3.6  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    26   4.7  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   6.2  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    25   6.2  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    25   6.2  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   6.2  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    25   8.3  

>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score =  119 bits (286), Expect = 4e-28
 Identities = 58/98 (59%), Positives = 72/98 (73%)
 Frame = +3

Query: 123 LSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKV 302
           L +F    +L N    S + Y +T  NL++ S+TKVI QGFTGKQGTFH+Q A+DYGTKV
Sbjct: 12  LRRFSSSSQLKN----SKSLYEQTIPNLMINSDTKVIFQGFTGKQGTFHAQHAMDYGTKV 67

Query: 303 VGGVSPKKAGTEHLGKPVFGTVKEAKAGTGATASVIYV 416
           VGG +PKKAGT HLGKPVFGT++EA   T A AS ++V
Sbjct: 68  VGGTNPKKAGTTHLGKPVFGTIEEAMKETKADASAVFV 105



 Score = 68.1 bits (159), Expect = 9e-13
 Identities = 30/39 (76%), Positives = 33/39 (84%)
 Frame = +1

Query: 469 PLIVCITEGVPQHDMVRVKHALLRQNKSRLVGPNCPGII 585
           PLIV ITEG+PQHDM+RV   L  Q+KSRLVGPNCPGII
Sbjct: 123 PLIVAITEGIPQHDMLRVSDILKTQSKSRLVGPNCPGII 161


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +3

Query: 180 PYAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVG-GVSPKKAGTEHLGKPV 356
           PY+  R NL +TS        F G +   H  Q+ +   ++    + PK+  +    KPV
Sbjct: 470 PYSTFRLNLSVTSPYNA---DFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPV 526

Query: 357 FGTVKEAKAG 386
            G V++  AG
Sbjct: 527 MGIVQDTLAG 536


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 338 FCTSLLW*HSSNNFSTIVKGLLAVEGTLLSSETLNNHFCFTCKD 207
           FCTS ++   S   + I+KG+LA     + +++   HF  TC +
Sbjct: 252 FCTSEVFRCLSKR-AEILKGVLASNVIAMQTDSYTRHFLSTCSN 294


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 391 PVPAFASLTVPNTGLPRCSVPAFFGDTPPTTLVP 290
           P+P++ + ++PN G+P  ++P      P T  +P
Sbjct: 124 PLPSYNTASLPNAGIP-AAMPGMPSGYPGTVPIP 156


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 69  PFRRFTFNNSTMAMPVRVLSKFKDGLK-LGNVRFASGNPYA 188
           PF    F N T  +PV  +S+  +G +   N   +   P+A
Sbjct: 33  PFESSVFENKTQVLPVDSVSRLSNGARSRSNSNISLSEPHA 73


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/69 (18%), Positives = 32/69 (46%)
 Frame = +3

Query: 81   FTFNNSTMAMPVRVLSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKVIVQGFTGKQG 260
            +  NN+     V+V   F+  +KLG V        ++T++N +++     ++  F   + 
Sbjct: 801  YKLNNTPSEQSVKVSHFFEFNMKLGEVTLILCREDSQTKRNSMVSVNFAKLLLSFNQFED 860

Query: 261  TFHSQQALD 287
              H + +++
Sbjct: 861  NSHLRMSIN 869


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -1

Query: 590 GAMIPGQLGPTSLDLFCLKRACFTRTISCCGTPSVMHTMRGH 465
           G +I  Q  P++          FT  +  C T + + TM+GH
Sbjct: 135 GTIISAQFSPSTSSRLVTGSGDFTARLWDCDTQTPIATMKGH 176


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 166 NRTLPSFSPSLNLERTRTGIAIVELLNVNL 77
           NR  PS+S SLN   T   ++ VE +N +L
Sbjct: 297 NRAPPSYSFSLNCSHTYQPVSCVEPVNHDL 326


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -1

Query: 386 ACLCLFDCTKHRLTKMFCTSLLW*HS---SNNFSTIVKGLLAVEGTLLSSETLNNHFCFT 216
           A L L     +++  +F  SL   H+     NF+ I+  + ++      S+   NHF F 
Sbjct: 632 AALDLISLIVNKVLALFDLSLFEKHNIPAPTNFNDIISFIPSITRLNELSQVSFNHFYFL 691

Query: 215 CKDQI 201
           CK  I
Sbjct: 692 CKGDI 696


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 97  LQWLCQSGFFLSSKMD*NSAMYDLHPATLM 186
           L W   S F ++  MD +  +YD H   L+
Sbjct: 134 LCWSVDSNFLIAGAMDNSLRLYDAHTGQLL 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,019
Number of Sequences: 5004
Number of extensions: 47013
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)