Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28f14
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1015 + 23307700-23307906,23309274-23309483,23309915-233100...   101   4e-22
04_04_1339 + 32760424-32760584,32762428-32764462                       33   0.23 
01_07_0231 + 42176598-42178117,42178232-42179753                       32   0.39 
11_04_0457 + 17916177-17916526,17917397-17917523,17917887-179182...    28   6.4  
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265...    28   6.4  
11_06_0120 - 20324794-20325204,20325416-20325545,20326172-203262...    27   8.5  
02_01_0095 - 679597-679671,679775-679890,682241-682319,682446-68...    27   8.5  

>07_03_1015 +
           23307700-23307906,23309274-23309483,23309915-23310085,
           23310163-23310286,23310753-23310814,23311185-23311266,
           23311870-23312009
          Length = 331

 Score =  101 bits (242), Expect = 4e-22
 Identities = 46/71 (64%), Positives = 56/71 (78%)
 Frame = +3

Query: 204 LILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFGTVKEAKA 383
           + +   T+VI QG TGK GTFH++QA++YGT +VGGV+PKK GTEHLG PVF +V EAKA
Sbjct: 37  VFVDKSTRVICQGITGKNGTFHTEQAIEYGTTMVGGVTPKKGGTEHLGLPVFNSVAEAKA 96

Query: 384 GTGATASVIYV 416
            T A ASVIYV
Sbjct: 97  ETKANASVIYV 107



 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 29/38 (76%), Positives = 36/38 (94%)
 Frame = +1

Query: 472 LIVCITEGVPQHDMVRVKHALLRQNKSRLVGPNCPGII 585
           L+VCITEG+PQHDMV+VK AL +Q+K+RL+GPNCPGII
Sbjct: 126 LVVCITEGIPQHDMVKVKAALNKQSKTRLIGPNCPGII 163


>04_04_1339 + 32760424-32760584,32762428-32764462
          Length = 731

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +3

Query: 66  FPFRRFTFNNSTMAMPVRVLSKFKDGLKLGNVRFASGNPYAETRKNL 206
           F  RR   N ST  M V +L    DGL  G++  A+G P+A+ ++ L
Sbjct: 550 FGGRRHELNVSTYQMCVLMLFNSADGLTYGDIEQATGIPHADLKRCL 596


>01_07_0231 + 42176598-42178117,42178232-42179753
          Length = 1013

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 24/78 (30%), Positives = 32/78 (41%)
 Frame = +3

Query: 174 GNPYAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKP 353
           G    E     I++S TK      TGK  TF    +L      VGG     +    +G+ 
Sbjct: 672 GTTTPEKELESIVSSSTKSSKLA-TGKMVTFGPGNSLR-SEDFVGGADALLSKATEIGRG 729

Query: 354 VFGTVKEAKAGTGATASV 407
           VFGTV  A  G G   ++
Sbjct: 730 VFGTVYRASVGEGRVVAI 747


>11_04_0457 +
           17916177-17916526,17917397-17917523,17917887-17918287,
           17918496-17918704,17919328-17919449,17920437-17920562,
           17920675-17920801,17920945-17921000
          Length = 505

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 590 GAMIPGQLGPTSLDLFCLKRACFTRTISCCGTP 492
           G+  P   G TSLD+ C +   +T  +S  G P
Sbjct: 106 GSSRPAAYGSTSLDMLCDRTIDYTEQLSVMGKP 138


>01_06_0529 -
           30026101-30026277,30026363-30026438,30026509-30026570,
           30026882-30027031,30027213-30027338,30028096-30028305,
           30028870-30028938,30029024-30029080,30029131-30029277,
           30029358-30029542,30029623-30029698,30029796-30029918,
           30030395-30030410,30031743-30032745,30033521-30033789,
           30034297-30034415
          Length = 954

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 469 PLIVCITEGVPQHDMVRVKHALLR 540
           PL+ CIT  VPQ  +  ++HA+ +
Sbjct: 757 PLVACITRLVPQKGLHLIRHAIYK 780


>11_06_0120 -
           20324794-20325204,20325416-20325545,20326172-20326255,
           20326584-20326823,20327418-20327498,20327761-20328113
          Length = 432

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = -1

Query: 245 ETLNNHFCFTCKDQIFSGFSIRVAGCKSYIAEF*SIFELRKNPDW-----HSHCRIIECK 81
           +TL +H    CK QI  G   +  G   Y+    ++ E +KNPDW        C    C+
Sbjct: 227 KTLGHHTS-CCKCQIVQG---QFCGDCLYMRYGENVLEAKKNPDWICPVCRGICNCSICR 282

Query: 80  STKG 69
           + KG
Sbjct: 283 TKKG 286


>02_01_0095 -
           679597-679671,679775-679890,682241-682319,682446-682539,
           682638-682716,682846-682933,683023-683106,683351-683398,
           684044-684118,684274-684315,684347-684416,684551-684589,
           685118-685191,686936-687028,687203-687300,688170-688236
          Length = 406

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +3

Query: 285 DYGTKVVGGVSPK--KAGTEHLGKPVF 359
           DY T+ VGG  P+  KA TE L K  F
Sbjct: 16  DYSTRYVGGSEPRLVKAATEQLNKLPF 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,585,387
Number of Sequences: 37544
Number of extensions: 316835
Number of successful extensions: 807
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)