Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28f14
(590 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68204-1|CAA92426.1| 132|Homo sapiens succinyl coenzyme A synth... 116 5e-26
CR457139-1|CAG33420.1| 333|Homo sapiens SUCLG1 protein. 116 5e-26
BC000504-1|AAH00504.1| 333|Homo sapiens SUCLG1 protein protein. 116 5e-26
AC096770-1|AAY24107.1| 333|Homo sapiens unknown protein. 116 5e-26
AF104921-1|AAD17940.2| 333|Homo sapiens succinyl-CoA synthetase... 115 1e-25
Z98744-5|CAB11421.1| 226|Homo sapiens histone 1, H1b protein. 29 9.3
X83509-1|CAA58498.1| 226|Homo sapiens Histone H1.5 protein. 29 9.3
J02960-1|AAA88016.1| 251|Homo sapiens unknown protein protein. 29 9.3
BC101583-1|AAI01584.1| 226|Homo sapiens histone cluster 1, H1b ... 29 9.3
BC101581-1|AAI01582.1| 226|Homo sapiens histone cluster 1, H1b ... 29 9.3
BC069101-1|AAH69101.1| 226|Homo sapiens histone cluster 1, H1b ... 29 9.3
AF531304-1|AAN06704.1| 226|Homo sapiens histone H1 protein. 29 9.3
>Z68204-1|CAA92426.1| 132|Homo sapiens succinyl coenzyme A
synthetase protein.
Length = 132
Score = 116 bits (280), Expect = 5e-26
Identities = 54/78 (69%), Positives = 62/78 (79%)
Frame = +3
Query: 183 YAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFG 362
Y +R++L + TK+I QGFTGKQGTFHSQQAL+YGTK+VGG +P K G HLG PVF
Sbjct: 30 YTASRQHLYVDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQTHLGLPVFN 89
Query: 363 TVKEAKAGTGATASVIYV 416
TVKEAK TGATASVIYV
Sbjct: 90 TVKEAKEQTGATASVIYV 107
>CR457139-1|CAG33420.1| 333|Homo sapiens SUCLG1 protein.
Length = 333
Score = 116 bits (280), Expect = 5e-26
Identities = 54/78 (69%), Positives = 62/78 (79%)
Frame = +3
Query: 183 YAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFG 362
Y +R++L + TK+I QGFTGKQGTFHSQQAL+YGTK+VGG +P K G HLG PVF
Sbjct: 30 YTASRQHLYVDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQTHLGLPVFN 89
Query: 363 TVKEAKAGTGATASVIYV 416
TVKEAK TGATASVIYV
Sbjct: 90 TVKEAKEQTGATASVIYV 107
Score = 77.8 bits (183), Expect = 3e-14
Identities = 31/44 (70%), Positives = 38/44 (86%)
Frame = +1
Query: 454 LRLKCPLIVCITEGVPQHDMVRVKHALLRQNKSRLVGPNCPGII 585
+ + PL+VCITEG+PQ DMVRVKH LLRQ K+RL+GPNCPG+I
Sbjct: 120 IEAEIPLVVCITEGIPQQDMVRVKHKLLRQEKTRLIGPNCPGVI 163
>BC000504-1|AAH00504.1| 333|Homo sapiens SUCLG1 protein protein.
Length = 333
Score = 116 bits (280), Expect = 5e-26
Identities = 54/78 (69%), Positives = 62/78 (79%)
Frame = +3
Query: 183 YAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFG 362
Y +R++L + TK+I QGFTGKQGTFHSQQAL+YGTK+VGG +P K G HLG PVF
Sbjct: 30 YTASRQHLYVDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQTHLGLPVFN 89
Query: 363 TVKEAKAGTGATASVIYV 416
TVKEAK TGATASVIYV
Sbjct: 90 TVKEAKEQTGATASVIYV 107
Score = 77.8 bits (183), Expect = 3e-14
Identities = 31/44 (70%), Positives = 38/44 (86%)
Frame = +1
Query: 454 LRLKCPLIVCITEGVPQHDMVRVKHALLRQNKSRLVGPNCPGII 585
+ + PL+VCITEG+PQ DMVRVKH LLRQ K+RL+GPNCPG+I
Sbjct: 120 IEAEIPLVVCITEGIPQQDMVRVKHKLLRQEKTRLIGPNCPGVI 163
>AC096770-1|AAY24107.1| 333|Homo sapiens unknown protein.
Length = 333
Score = 116 bits (280), Expect = 5e-26
Identities = 54/78 (69%), Positives = 62/78 (79%)
Frame = +3
Query: 183 YAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFG 362
Y +R++L + TK+I QGFTGKQGTFHSQQAL+YGTK+VGG +P K G HLG PVF
Sbjct: 30 YTASRQHLYVDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQTHLGLPVFN 89
Query: 363 TVKEAKAGTGATASVIYV 416
TVKEAK TGATASVIYV
Sbjct: 90 TVKEAKEQTGATASVIYV 107
Score = 77.8 bits (183), Expect = 3e-14
Identities = 31/44 (70%), Positives = 38/44 (86%)
Frame = +1
Query: 454 LRLKCPLIVCITEGVPQHDMVRVKHALLRQNKSRLVGPNCPGII 585
+ + PL+VCITEG+PQ DMVRVKH LLRQ K+RL+GPNCPG+I
Sbjct: 120 IEAEIPLVVCITEGIPQQDMVRVKHKLLRQEKTRLIGPNCPGVI 163
>AF104921-1|AAD17940.2| 333|Homo sapiens succinyl-CoA synthetase
alpha subunit protein.
Length = 333
Score = 115 bits (277), Expect = 1e-25
Identities = 54/78 (69%), Positives = 61/78 (78%)
Frame = +3
Query: 183 YAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFG 362
Y +R++L + TK+I QGFTGKQGTFHSQQAL+YGTK+VGG P K G HLG PVF
Sbjct: 30 YTASRQHLYVDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTLPGKGGQTHLGLPVFN 89
Query: 363 TVKEAKAGTGATASVIYV 416
TVKEAK TGATASVIYV
Sbjct: 90 TVKEAKEQTGATASVIYV 107
Score = 77.8 bits (183), Expect = 3e-14
Identities = 31/44 (70%), Positives = 38/44 (86%)
Frame = +1
Query: 454 LRLKCPLIVCITEGVPQHDMVRVKHALLRQNKSRLVGPNCPGII 585
+ + PL+VCITEG+PQ DMVRVKH LLRQ K+RL+GPNCPG+I
Sbjct: 120 IEAEIPLVVCITEGIPQQDMVRVKHKLLRQEKTRLIGPNCPGVI 163
>Z98744-5|CAB11421.1| 226|Homo sapiens histone 1, H1b protein.
Length = 226
Score = 29.5 bits (63), Expect = 9.3
Identities = 26/95 (27%), Positives = 36/95 (37%)
Frame = +3
Query: 123 LSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKV 302
L+ K L G N + +++ T V +G TG G+F + G
Sbjct: 62 LAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKG-TGASGSFKLNKKAASGE-- 118
Query: 303 VGGVSPKKAGTEHLGKPVFGTVKEAKAGTGATASV 407
KKAG KP T K+AK GA +V
Sbjct: 119 -AKPKAKKAGAAKAKKPAGATPKKAKKAAGAKKAV 152
>X83509-1|CAA58498.1| 226|Homo sapiens Histone H1.5 protein.
Length = 226
Score = 29.5 bits (63), Expect = 9.3
Identities = 26/95 (27%), Positives = 36/95 (37%)
Frame = +3
Query: 123 LSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKV 302
L+ K L G N + +++ T V +G TG G+F + G
Sbjct: 62 LAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKG-TGASGSFKLNKKAASGE-- 118
Query: 303 VGGVSPKKAGTEHLGKPVFGTVKEAKAGTGATASV 407
KKAG KP T K+AK GA +V
Sbjct: 119 -AKPKAKKAGAAKAKKPAGATPKKAKKAAGAKKAV 152
>J02960-1|AAA88016.1| 251|Homo sapiens unknown protein protein.
Length = 251
Score = 29.5 bits (63), Expect = 9.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 437 CCSSRGRYINNRGSCSCACLCL 372
C R++ N G C CA LCL
Sbjct: 125 CLGGHSRFLPNVGQCRCAALCL 146
>BC101583-1|AAI01584.1| 226|Homo sapiens histone cluster 1, H1b
protein.
Length = 226
Score = 29.5 bits (63), Expect = 9.3
Identities = 26/95 (27%), Positives = 36/95 (37%)
Frame = +3
Query: 123 LSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKV 302
L+ K L G N + +++ T V +G TG G+F + G
Sbjct: 62 LAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKG-TGASGSFKLNKKAASGE-- 118
Query: 303 VGGVSPKKAGTEHLGKPVFGTVKEAKAGTGATASV 407
KKAG KP T K+AK GA +V
Sbjct: 119 -AKPKAKKAGAAKAKKPAGATPKKAKKAAGAKKAV 152
>BC101581-1|AAI01582.1| 226|Homo sapiens histone cluster 1, H1b
protein.
Length = 226
Score = 29.5 bits (63), Expect = 9.3
Identities = 26/95 (27%), Positives = 36/95 (37%)
Frame = +3
Query: 123 LSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKV 302
L+ K L G N + +++ T V +G TG G+F + G
Sbjct: 62 LAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKG-TGASGSFKLNKKAASGE-- 118
Query: 303 VGGVSPKKAGTEHLGKPVFGTVKEAKAGTGATASV 407
KKAG KP T K+AK GA +V
Sbjct: 119 -AKPKAKKAGAAKAKKPAGATPKKAKKAAGAKKAV 152
>BC069101-1|AAH69101.1| 226|Homo sapiens histone cluster 1, H1b
protein.
Length = 226
Score = 29.5 bits (63), Expect = 9.3
Identities = 26/95 (27%), Positives = 36/95 (37%)
Frame = +3
Query: 123 LSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKV 302
L+ K L G N + +++ T V +G TG G+F + G
Sbjct: 62 LAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKG-TGASGSFKLNKKAASGE-- 118
Query: 303 VGGVSPKKAGTEHLGKPVFGTVKEAKAGTGATASV 407
KKAG KP T K+AK GA +V
Sbjct: 119 -AKPKAKKAGAAKAKKPAGATPKKAKKAAGAKKAV 152
>AF531304-1|AAN06704.1| 226|Homo sapiens histone H1 protein.
Length = 226
Score = 29.5 bits (63), Expect = 9.3
Identities = 26/95 (27%), Positives = 36/95 (37%)
Frame = +3
Query: 123 LSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKV 302
L+ K L G N + +++ T V +G TG G+F + G
Sbjct: 62 LAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKG-TGASGSFKLNKKAASGE-- 118
Query: 303 VGGVSPKKAGTEHLGKPVFGTVKEAKAGTGATASV 407
KKAG KP T K+AK GA +V
Sbjct: 119 -AKPKAKKAGAAKAKKPAGATPKKAKKAAGAKKAV 152
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,647,141
Number of Sequences: 237096
Number of extensions: 1833764
Number of successful extensions: 3675
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3668
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -