Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28f14
(590 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003389-2|AAC71132.1| 321|Caenorhabditis elegans Hypothetical ... 114 4e-26
Z70203-4|CAA94107.1| 322|Caenorhabditis elegans Hypothetical pr... 110 8e-25
AL021493-6|CAA16394.2| 781|Caenorhabditis elegans Hypothetical ... 29 1.9
U37429-10|AAN63413.2| 100|Caenorhabditis elegans Hypothetical p... 29 2.5
U80442-3|AAB37665.1| 333|Caenorhabditis elegans Hypothetical pr... 27 7.5
U10438-12|ABB88244.1| 325|Caenorhabditis elegans Hypothetical p... 27 7.5
U53139-4|AAK18931.2| 369|Caenorhabditis elegans Serpentine rece... 27 10.0
U00058-2|AAL02528.2| 832|Caenorhabditis elegans Hypothetical pr... 27 10.0
>AF003389-2|AAC71132.1| 321|Caenorhabditis elegans Hypothetical
protein F23H11.3 protein.
Length = 321
Score = 114 bits (275), Expect = 4e-26
Identities = 53/78 (67%), Positives = 62/78 (79%)
Frame = +3
Query: 183 YAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFG 362
Y +TR NL++ TKVIVQGFTG+QGTFHS+Q L+Y T +VGGVSP KAG HLG PVFG
Sbjct: 22 YNDTRNNLMINKSTKVIVQGFTGRQGTFHSKQMLEYNTNLVGGVSPNKAGQTHLGLPVFG 81
Query: 363 TVKEAKAGTGATASVIYV 416
+V EAK TGA A+VIYV
Sbjct: 82 SVAEAKDRTGADATVIYV 99
Score = 72.1 bits (169), Expect = 3e-13
Identities = 32/39 (82%), Positives = 36/39 (92%)
Frame = +1
Query: 472 LIVCITEGVPQHDMVRVKHALLRQNKSRLVGPNCPGIIA 588
LIV ITEG+PQ DMVRVK+ LL+QNKSRL+GPNCPGIIA
Sbjct: 118 LIVAITEGIPQQDMVRVKNRLLKQNKSRLLGPNCPGIIA 156
>Z70203-4|CAA94107.1| 322|Caenorhabditis elegans Hypothetical
protein C05G5.4 protein.
Length = 322
Score = 110 bits (264), Expect = 8e-25
Identities = 53/78 (67%), Positives = 59/78 (75%)
Frame = +3
Query: 183 YAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFG 362
Y T NL + +TKVIVQGFTGKQGTFH +Q L+Y TKVVGGV+ KAGTEHLG PVF
Sbjct: 21 YNSTYNNLKINKDTKVIVQGFTGKQGTFHGKQMLEYNTKVVGGVNANKAGTEHLGLPVFK 80
Query: 363 TVKEAKAGTGATASVIYV 416
V EA+ TGA ASVIYV
Sbjct: 81 NVSEARNKTGADASVIYV 98
Score = 79.4 bits (187), Expect = 2e-15
Identities = 33/40 (82%), Positives = 38/40 (95%)
Frame = +1
Query: 469 PLIVCITEGVPQHDMVRVKHALLRQNKSRLVGPNCPGIIA 588
PL+VCITEG+PQHDMVRVK LL+QNK+RLVGPNCPGII+
Sbjct: 116 PLVVCITEGIPQHDMVRVKSRLLKQNKTRLVGPNCPGIIS 155
>AL021493-6|CAA16394.2| 781|Caenorhabditis elegans Hypothetical
protein Y51A2B.6 protein.
Length = 781
Score = 29.5 bits (63), Expect = 1.9
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +3
Query: 120 VLSKFKDGLKLGNVRFASGNPYAETRKNLILTSETKV--IVQGFTGKQGTFHSQQALDYG 293
V FKD +KL N+R A Y+E ++L+ + +V + +G G + L
Sbjct: 280 VFEPFKDVVKLMNLREALPRQYSEHDQSLMSKNLKQVMNMAKGLKSSGGDIKRLENLRSN 339
Query: 294 TKVVGGVSPKKAGTEHLGK 350
TK + V K G LG+
Sbjct: 340 TKELEMVDLKNIGDPWLGR 358
>U37429-10|AAN63413.2| 100|Caenorhabditis elegans Hypothetical
protein F09E5.16 protein.
Length = 100
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 431 SSRGRYINNRGSCSCACLCLFD-CTKHRLTK 342
SSRG + R + S AC CL CT H +TK
Sbjct: 70 SSRGSVMRRRSAGSYACPCLHKVCTYHCMTK 100
>U80442-3|AAB37665.1| 333|Caenorhabditis elegans Hypothetical
protein T20F5.4 protein.
Length = 333
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 493 GVPQHDMVRVKHALLRQN-KSRLVGPNCPG 579
G+ + DM+R KH LL QN +SRL P PG
Sbjct: 19 GMQELDMLRAKHTLLIQNLRSRL--PIIPG 46
>U10438-12|ABB88244.1| 325|Caenorhabditis elegans Hypothetical
protein B0280.1b protein.
Length = 325
Score = 27.5 bits (58), Expect = 7.5
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = -1
Query: 299 FSTIVKGLLAVEGTL--LSSETLNNHFCFTCKDQIFSGFSIRVAGCKSYIAEF*S-IFEL 129
+S V LA+ G L + S+ + F + C+D GF+ R C S++ IF L
Sbjct: 247 YSWWVLASLAILGRLNFIDSDAMKK-FIYACQDDETGGFADRPGDCVSFLNNIQKFIFVL 305
Query: 128 RKNPDWHSHCRIIEC 84
+ N + ++ EC
Sbjct: 306 QSNNVLATTKQLFEC 320
>U53139-4|AAK18931.2| 369|Caenorhabditis elegans Serpentine
receptor, class w protein67 protein.
Length = 369
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 434 CSSRGRYINNRGSCSCACLCLFDCTKHRLTKMFCTSLLW*HSS 306
C+S ++ G C CLCLF + LT +F W + S
Sbjct: 64 CNSINIFLMGTGICDMFCLCLF-IHAYTLTLIFPDDRCWNYHS 105
>U00058-2|AAL02528.2| 832|Caenorhabditis elegans Hypothetical
protein W03A5.1 protein.
Length = 832
Score = 27.1 bits (57), Expect = 10.0
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Frame = +3
Query: 165 FASGNPYAETRKN-LILTSETKVIVQGFTGKQGTFHSQQALD-YGTKV----VGGVSPKK 326
F + E KN L L+ E K +V + QG + + + T + + V KK
Sbjct: 462 FDGEKKHHERLKNRLNLSKEEKELVSSYMKNQGPQKKWENMPLHETSIRINSLFYVDGKK 521
Query: 327 --AGTEHLGKPVFGTVKEAK 380
GT+ +GK FGTVK+ K
Sbjct: 522 IDCGTDQIGKGAFGTVKKGK 541
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,386,880
Number of Sequences: 27780
Number of extensions: 279615
Number of successful extensions: 704
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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