Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28f12
         (214 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    24   2.4  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    24   3.1  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    23   5.5  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    23   5.5  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    23   5.5  
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    23   7.3  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    23   7.3  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    23   7.3  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    22   9.6  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    22   9.6  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 40  DVAALPYIPTRAVNFIDGSIF 102
           DV+A  YIPT  ++  DG IF
Sbjct: 361 DVSA--YIPTNVISITDGQIF 379


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 124 FLVIVDFCFYYII*KK 171
           FLVI+ FCFY +  +K
Sbjct: 6   FLVIIAFCFYVLYLEK 21


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 19  SLTICSRDVAALPYIPTRAVNFIDGSIFYIFILCNFLVIVDF 144
           S  +  RD++ALP +  +  N I  +  Y  +    L++V F
Sbjct: 68  SSILIDRDLSALPIVAAKGSNEIATTFDYADLNSFLLMVVGF 109


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 78  KFYRWFNFL 104
           KFYRWFN L
Sbjct: 55  KFYRWFNNL 63


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 43  VAALPYIPTRAVNFIDGSIFYIFILCNFL 129
           ++ LPY    A+N + G ++    +C+FL
Sbjct: 294 LSCLPYTSLDALNVVCGQVWKSQKICDFL 322


>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 61  IPTRAVNFIDGSIFYIFILCNFLVIVDFC 147
           IP    NF +GS+ Y+F   N +    FC
Sbjct: 173 IPCGTANFCNGSLEYLFEQKNPIPSYLFC 201


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 152 IILYKKNSVVFRCRKYYSIIR 214
           I+  K  ++VFRC +  S++R
Sbjct: 714 ILTQKLYTIVFRCNELQSVLR 734


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 3   ITKAQFFNNLQQRCSRFALYTDSGGKF 83
           I+KA     LQ RC+  A     GG++
Sbjct: 622 ISKAGIVTTLQARCTIIAAANPIGGRY 648


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 157 YNKNKNLRSLKSYIG*R 107
           YN N+N R++ S++G R
Sbjct: 28  YNSNENDRAVNSFLGNR 44


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +1

Query: 100  FYIFILCNFLVIVDFCFYY 156
            FYI ++C F+ +    ++Y
Sbjct: 2327 FYIALICQFVAVGGLLYHY 2345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 728,108
Number of Sequences: 5004
Number of extensions: 11311
Number of successful extensions: 33
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)