Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28f12
         (214 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006774-5|AAF60618.1|  363|Caenorhabditis elegans Hypothetical ...    26   3.2  
AF016685-11|AAO12416.1|  172|Caenorhabditis elegans Hypothetical...    25   5.5  
Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical p...    25   7.3  
Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical pr...    25   7.3  
AL023835-14|CAA19489.2|  192|Caenorhabditis elegans Hypothetical...    25   7.3  
Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF067944-1|AAC17672.1|  237|Caenorhabditis elegans Hypothetical ...    25   9.7  
AF038619-1|AAB92076.2|  468|Caenorhabditis elegans Hypothetical ...    25   9.7  

>AC006774-5|AAF60618.1|  363|Caenorhabditis elegans Hypothetical
           protein Y46H3A.4 protein.
          Length = 363

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 121 NFLVIVDFCFYYII 162
           NFLV + +CFYY++
Sbjct: 237 NFLVFLSWCFYYLL 250


>AF016685-11|AAO12416.1|  172|Caenorhabditis elegans Hypothetical
           protein F59E11.7b protein.
          Length = 172

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 33  QQRCSRFALYTDSGGKFYRWFNFLYLYPM*LFS 131
           +++     L+ D  G  YR+F F YL P+ L S
Sbjct: 130 EEKACLHTLFNDFHGVGYRFFKFEYLKPLFLKS 162


>Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical
           protein F23B2.12 protein.
          Length = 1080

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 55  PYIPTRAVNFIDGSIFYIFILCNFLVIVDF 144
           P +   A+N+ D  +FY+ I+  F  IV+F
Sbjct: 255 PRLNETALNYNDIQMFYLAIIAPFQEIVEF 284


>Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical
           protein F23B2.12 protein.
          Length = 1080

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 55  PYIPTRAVNFIDGSIFYIFILCNFLVIVDF 144
           P +   A+N+ D  +FY+ I+  F  IV+F
Sbjct: 255 PRLNETALNYNDIQMFYLAIIAPFQEIVEF 284


>AL023835-14|CAA19489.2|  192|Caenorhabditis elegans Hypothetical
           protein Y37A1B.4 protein.
          Length = 192

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 45  SRFALYTDSGGKFYRWFNFLYLYPM*LFS 131
           + F LY+ +GG+   W   +++ P+ L S
Sbjct: 106 AEFGLYSATGGRVLVWLEQIHVQPLELLS 134


>Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical protein
            C10C6.6 protein.
          Length = 1178

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 13   RNSLTICSRDVAALPYIPTRAVNFIDGSIF 102
            RN+L +C      + YI  R +NF+ G +F
Sbjct: 1149 RNALLMCVTADLVICYIIDRGLNFLLGDMF 1178


>U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical
           protein F25E2.2 protein.
          Length = 624

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 61  IPTRAVNFIDGSIFYIF 111
           IP  A+ ++DG+ FY F
Sbjct: 272 IPLYAIRYVDGNAFYCF 288


>AF067944-1|AAC17672.1|  237|Caenorhabditis elegans Hypothetical
           protein K10C9.4 protein.
          Length = 237

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 94  SIFYIFILCNFLVIVDFCFYYII 162
           ++FYIFIL N L+++   F+ II
Sbjct: 104 TLFYIFIL-NILILILILFFTII 125


>AF038619-1|AAB92076.2|  468|Caenorhabditis elegans Hypothetical
           protein F56A11.4 protein.
          Length = 468

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 28  ICSRDVAALPYI--PTRAVNFIDGSIFYIFILCNFLVIVDFCFYYI 159
           +CS  +    ++    R ++    +I Y+F+L    ++V+ CF  I
Sbjct: 80  VCSLGIVLNTFLLLSLRRLDVFRSNILYLFLLACLDILVELCFMLI 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,950,870
Number of Sequences: 27780
Number of extensions: 61801
Number of successful extensions: 179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)