Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28f12
         (214 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   2.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   3.8  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    20   3.8  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    19   6.7  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    19   6.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 1   GLRKRNSLTICSRDVAALP 57
           GLR+ ++L I   +V ALP
Sbjct: 145 GLRELHTLEIVESNVQALP 163


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 54  ALYTDSGGKFYRWFNFLYL 110
           A+Y D   +F+  F+FL L
Sbjct: 356 AIYIDKVSRFFFPFSFLIL 374


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 157 YNKNKNLRSLKSYIG*RYKKLNH 89
           YN N N  +  +     YKKL +
Sbjct: 92  YNYNNNYNNYNNNYNTNYKKLQY 114


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 58  YIPTRAVNF 84
           Y PT+A+NF
Sbjct: 83  YFPTQALNF 91


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 58  YIPTRAVNF 84
           Y PT+A+NF
Sbjct: 83  YFPTQALNF 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,731
Number of Sequences: 438
Number of extensions: 846
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3165825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)